Gossypium hirsutum (upland cotton): 107930724
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Entry
107930724 CDS
T04793
Name
(RefSeq) spliceosome-associated protein 130 A
KO
K12830
splicing factor 3B subunit 3
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107930724
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
107930724
03041 Spliceosome [BR:
ghi03041
]
107930724
03036 Chromosome and associated proteins [BR:
ghi03036
]
107930724
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
107930724
Spliceosome [BR:
ghi03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
107930724
Complex B
107930724
Complex C
U2 SnRNP specific factors
107930724
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
107930724
TFTC complex
107930724
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_EML_2
Beta-prop_BBS7
WDR55
Motif
Other DBs
NCBI-GeneID:
107930724
NCBI-ProteinID:
XP_016717921
UniProt:
A0A1U8LTK6
LinkDB
All DBs
Position
D10:complement(62079223..62083872)
Genome browser
AA seq
1214 aa
AA seq
DB search
MYLYNLTLQQATGIVSAINGNFSGGKIQEIVVARGKILSLLRPDDLGKLQTLHSVEIFGC
IRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNVFDKVHQETFGKSGCRRIVPGQYL
AIDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGVDCGFDNPI
FAAIELDYSEADQDSTGVAAGEAQKHLTFYELDLGLNHVSRKWSEQVDNGANMLVTVPGG
GDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRADLPEERGVLIVSAATHKQKSMFFFLLQ
TEYGDIFKVTLEHGNEGVSELKIKYFDTIPVTSSMCVLKTGFLFAASEFGNHALYQFQAI
GDDPDVESSSSTLMETEEGFQPVFFQPRGLKNLVRIDQAESLMPIMDMKIANLFEEETPQ
IFSLCGRGPRSSLRILRPGLAISEMAVSQLPGVPSAVWTVKKNVNDAFDAYIVVSFANAT
LVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKR
TIVKVGSNGLQVVIALSGGELIYFEVDMTGQLMEVEKHEMSGDVACLDIAPVPEGRQRSR
FLAVGSYDNTIRILSLDPDDCMQVLSVQSVSSPPESLLFLEVKASVGGEDGADHPANLFL
NAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRAPKLFSVKVRGRPAMLCLSSRPWLGYIH
QGHFLLTPLSYETLEFAASFSSDQCAEGVVAVAGDALRVFTIERLGETFNETAIPLRYTP
RRFVLQPKRKLLVIIESDQGSYTAEEREAARKECFEAAGMGENGNSNMNQMENGGDDEDK
EDPLSDEQYGYPKAESNKWVSCIRVLDPRTASTTCLLELQDNEAAFSVCTVNFHDKEYGT
LLAVGTAKGLQFWPKRSLTAGFIHIYRFLEDGRSLELLHKTQVEGVPLALCQFQGRLLAG
IGSVLRLYDLGKRRLLRKCENKLFPNTIISIQTYRDRIYVGDIQESFHFCKYRRDENQLY
IFADDVVPRWLTASYHIDFDTMAGADKFGNVYFVRLPQDVSDEIEEDPTGGKIKWEQGRL
NGAPNKVEEIVQFHVGDVVTSLQKASLIPGGGECVLYGTVMGSLGALLPFTSRDDVDFFS
HLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPLDLQRKIADELDRTPG
EILKKLEEARNKII
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atgtatctctacaatttaactcttcaacaagccaccggcatcgtttccgccataaatgga
aacttctccggcggtaaaatccaagaaattgtcgtcgcccgtggtaagatcctttccctt
ctccgccccgacgatctcggtaagctccaaacacttcattccgtcgaaattttcggttgc
atacgttccctagctcagttccggctaactggagctcaaaaggactacattgttgtaggg
tccgattcgggtcggatcgttatacttgaatacaataaagagaagaacgtctttgataaa
gttcaccaagaaacttttgggaaatctgggtgtcgccggattgttccgggtcaatacttg
gctattgacccgaaaggaagagctgtaatgattggtgcttgtgagaagcagaaattagtt
tatgttttgaatagagataccgctgctaggttaaccatttcttcacctttagaagctcat
aaatcacatacgattgtttactctatttgtggtgttgattgtggtttcgataaccctatt
tttgctgccatcgagttggattactcggaggctgatcaggattccacgggagtggctgct
ggtgaagcacagaagcatttgacgttttatgaacttgatttagggcttaaccatgtgtct
cggaagtggtcggaacaggttgacaatggggcaaatatgttggtcacagtgcctggtggt
ggtgatgggccaagtggcgttttggtttgcgcagaaaattttgttatctataagaatcag
gggcatcctgatgttagagcggtgattcctagacgggctgatttgccagaagaacgtggt
gttttgattgtttcagcggctacacataagcagaagtcaatgtttttctttcttttgcag
acagaatatggggatatttttaaggttacattggaacatggaaatgaaggagtttcggaa
ttgaagattaagtattttgatacaattccggttacgtcttcaatgtgtgtgttgaaaact
ggttttctatttgcagcttcagagtttggcaatcatgctttgtatcagtttcaggctatt
ggggatgaccctgatgtggaatcatcatcatctacattgatggaaacagaagaaggtttt
cagccagtgtttttccagccaagagggcttaagaatctagttaggattgaccaagctgag
agcctgatgccaataatggacatgaaaattgctaatctcttcgaggaagaaacacctcag
atattttcactttgtggacgtggtcctcgttcatcattgaggatactaaggcctggttta
gccatcagtgagatggctgtttcacagcttcctggtgtcccaagtgctgtgtggactgtg
aagaaaaatgttaatgatgcctttgatgcatacattgtcgtgtcatttgccaatgcaaca
cttgttctttccattggtgaaacagttgaagaagttagcgatagtgggtttcttgatact
acgccctctcttgctgtttctttaattggtgatgattcactgatgcaagttcacccaaat
ggtattaggcatataagggaagatggacgtattaatgagtggagaacacctgggaaaagg
acgattgttaaagttggttcaaatgggcttcaagtagttattgcattgagtggaggtgag
cttatatactttgaggtggatatgactgggcaacttatggaagttgagaagcatgaaatg
tctggagatgtggcatgtctggacattgcccctgttcctgaaggaagacagaggtcccgt
ttccttgcggttggttcctatgataatacaatccgtatattatctttggatcctgatgat
tgtatgcaggttctgagtgttcagagtgtgtcctcacctcctgagtctctccttttcctt
gaagttaaggcatcggtaggtggtgaggatggtgctgatcaccctgccaatcttttcctt
aatgctggtctgcagaatggagttctgtttcggacggtagtggatatggttacagggcaa
ctttctgattcccgttcacgtttcttagggctacgagccccaaagttgttctctgttaaa
gtaagaggccgacctgcaatgctttgcttgtctagtcgaccatggcttggttatattcac
caaggacattttctgttaacacccctttcttacgagacacttgaatttgctgcctcgttt
tcatctgatcagtgtgccgaaggtgtcgttgctgttgcaggggatgcattgagagttttc
accattgagcgacttggagaaaccttcaatgagaccgctattcctttgaggtatactcct
aggaggtttgttttgcaaccaaagcggaaattgttggtaattattgagagtgaccaagga
tcatatactgcagaagagcgtgaagctgcaagaaaggagtgctttgaggctgcaggaatg
ggagaaaatggtaacagcaatatgaaccaaatggaaaatggtggtgatgatgaggacaaa
gaggatcccctctctgatgagcagtatggttatcctaaggcagagtcaaacaagtgggtt
tcttgcattagagttcttgatccgaggactgcttccacaacttgtcttttggagcttcag
gacaatgaagctgctttcagtgtgtgtactgtgaatttccatgataaagagtatggaact
ctgttggctgttggcacggccaagggtctgcagttttggcccaaaagaagcttaactgca
ggattcattcatatctataggtttttagaagatggcagatcgcttgaacttctgcacaag
acacaagtcgaaggtgttcctcttgctttatgccaatttcagggaagattacttgctggg
ataggatcggtgctccgattatatgacctggggaaaaggagactgcttaggaaatgtgag
aataagcttttccctaacactattatctctatccaaacttatcgtgatagaatatatgtt
ggggacatccaagagtcattccatttttgcaagtataggagggatgaaaatcaactgtat
atattcgctgatgatgttgttccaagatggcttactgcatcataccatatagattttgac
accatggctggtgcagacaagttcgggaatgtctattttgtgcggctgccacaagatgtc
tcagatgaaatagaggaagacccaactggtggaaagataaaatgggaacaagggaggctc
aatggagctcctaacaaggtagaggagatagttcagttccatgtcggggatgtggtaact
agtttgcagaaggcatctcttataccaggtggtggagagtgtgttctttatggaactgta
atggggagcttgggggcattgcttccgttcacttcccgtgatgatgttgacttcttttcg
cacctagagatgcatatgaggcaggaacaccctcccttgtgcggacgagatcatatggct
taccgatctgcttatttccctgtcaaggatgtgattgatggggatttgtgtgagcagttt
ccaaccctacctttggatctgcagagaaaaattgcagacgagttggaccgtactcctggg
gagatactgaagaaactcgaagaagcccgaaacaagatcatttga
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