Gossypium hirsutum (upland cotton): 107931419
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Entry
107931419 CDS
T04793
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107931419
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107931419
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107931419
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107931419
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
107931419
NCBI-ProteinID:
XP_016718816
UniProt:
A0A1U8LW58
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Position
D13:complement(64580971..64586248)
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AA seq
664 aa
AA seq
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MSGLLNSSVNGSASNIPDSSGRSFATSFSGQSGAASPGFHHTGTIQGLHGIHGSFNVPNM
PGTLTSRNSTLSNVPTGGVQQPTGNLSGGRFASNNLPVALSQLSHGSSHGHSGVTNRGGI
SVVGNPGFSSNTNGVGGSIPGILPTSAAIGNRNAVPGLGVSPILGNAGPRITSSMGNMVG
GGNIGRSISSGGGLSVPGLASRLNLSANSGSGSLSMQGQNRLMSGVLPQGSPQVISMLGN
SYPSAGGPLSQSHVQAVNNLSSMGILNDVNSTDNSPFDINNDFPQLTSRPSSAGGPQGQL
GSLRKQGPSPIVQQNQEFSIQNEDFPALPGFKGGNADYGMDLHQKDQLHDNTMLMMQSQH
FSMGRPAGFNLGGSYSSHRPQQQQQHAPSASTTGVSFSPVNDQDLLHLHGSDIFTSSHSS
YHSQTSGPPGIGLRPLNSSNSVSGMGYDQLIQQYQQHQNQSQLRLQQMSAVNQSFREPGM
KPMQVAQSNHDPFGLLGLQSVLRMNDLDLTSLALGIDLTTLGLNLNSSENLYKTFGSPWS
DEPAKGDPEFTVPQCYYAKQPPPLHQGYFSKFTVDTLFYIFYSMPKDEAQLYAANELYNR
GWFYHKEHRCWFIRVPNVEPLVKTNTYERGSYHCFDPISFETVRKDNFVVHYEMLEKRPA
LPQH
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggattacttaattcttctgtcaacggatcagcatcaaatattccagacagcagc
ggacgttctttcgctacatctttctctggtcagtctggcgcagcctcccctggtttccat
cacactggcactattcagggccttcatggtattcatggtagctttaatgttcccaacatg
cctggtactctcacatcaagaaactcaactttaagtaatgttccaactggcggggttcaa
caacctactgggaacctatctggtggaagatttgcgtcaaataatctccctgttgctctt
tctcagttatctcatggcagttcccacggacattcaggagtaaccaatagaggaggtatt
agtgttgtgggaaaccctggatttagtagtaacacgaatggagttggtggttctatacct
ggaattctcccaacatctgctgcaattggtaaccgcaatgctgttccaggattgggagta
tccccaattttgggaaatgcaggtcctaggataactagttctatgggaaacatggttggt
gggggcaacattgggaggagcataagctcgggtggaggattatccgtacctggtcttgct
tctcgcctgaacttaagtgccaatagtggatctggaagtttaagcatgcagggtcagaat
aggttgatgagtggtgtgcttcctcaaggatctcctcaggtaatttcaatgttgggcaat
tcttatccatctgctggtgggcctctttcccagagccatgttcaagctgtgaacaatctt
agttctatgggaattttgaatgatgtgaactctactgacaattccccttttgacataaac
aatgacttccctcagttgacaagtcgtcctagttctgctggagggcctcaaggacaattg
ggttcattacgaaaacaaggtcctagccccattgtccaacaaaaccaagagttcagcatt
caaaatgaagatttccctgctttaccaggatttaaaggtggtaatgctgactatggaatg
gatttgcaccagaaagatcaacttcatgacaataccatgttaatgatgcaatctcagcac
ttctctatggggaggcctgcaggatttaacttgggtggatcctattcttctcatcgcccg
cagcagcaacagcaacatgcgccatcagccagtaccactggagtctccttttcgcctgta
aacgaccaagatcttctccatttacatggctctgatattttcacatcttctcattcgagc
taccactcgcagaccagtggaccacctgggattgggctaaggcctctaaattcctcgaat
tcggtttctggtatgggttatgaccagctcatacagcaatatcagcagcatcaaaaccag
tcccagctccgtctgcaacagatgtcagctgtcaatcaatcatttagggaacctgggatg
aaaccaatgcaggttgcgcagtctaatcatgacccctttggattacttgggttgcaaagc
gtgctaaggatgaatgatcttgatctgacttcccttgctctcggaattgatctgacaaca
ctcgggttaaatttgaattcatcagaaaatctttacaagacatttggttctccgtggtct
gatgaaccagctaagggtgacccggagttcactgtgccacaatgttattacgctaagcaa
ccacctcctttacaccaaggttatttttcgaagttcaccgtggacacattgttctatata
ttttacagcatgccaaaagatgaagctcaattatacgctgcaaatgaactttacaataga
ggctggttttaccacaaggagcaccggtgttggttcataagggttcccaatgtcgagcca
ttagttaagacgaacacgtacgagagaggttcttatcactgttttgatccgatatcattt
gaaacagtccgcaaggataatttcgttgttcattacgagatgttggaaaaaagaccagca
ttacctcaacattaa
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