KEGG   Gossypium hirsutum (upland cotton): 107931482
Entry
107931482         CDS       T04793                                 
Name
(RefSeq) autophagy-related protein 16
  KO
K17890  autophagy-related protein 16-1
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi04136  Autophagy - other
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04136 Autophagy - other
    107931482
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ghi04131]
    107931482
   03029 Mitochondrial biogenesis [BR:ghi03029]
    107931482
Membrane trafficking [BR:ghi04131]
 Autophagy
  Autophagosome formation proteins
   Atg12 conjugation proteins
    107931482
 Others
  Specific organelles associated proteins
   Auto phagosome
    107931482
Mitochondrial biogenesis [BR:ghi03029]
 Mitochondrial quality control factors
  Mitophagy factors
   Autophagy-related proteins
    107931482
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_CDC20-Fz WD40_WDHD1_1st EIF3I Beta-prop_EML_2 WDR55 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_EML ATG16 Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st Beta-prop_SCAP ANAPC4_WD40 WDR90_beta-prop_4th Beta-prop_TEP1_C Beta-prop_RIG_2nd WD40_MABP1-WDR62_1st Beta-prop_NWD2_C Beta-prop_IFT140_1st Beta-prop_SPT8 NBCH_WD40 Beta-prop_WDR19_1st Beta-prop_WDR35_TULP_N Beta-prop_HPS5 Beta-prop_IFT122_1st WD40_RFWD3 WDR54 Beta-prop_VPS8 Beta-prop_DCAF4 Cytochrom_D1 Beta-prop_Vps41 Beta-prop_EIPR1 Beta-prop_RIG_1st Beta-prop_DCAF12 Beta-prop_NUP159_NUP214 PEP5_VPS11_N Fez1
Other DBs
NCBI-GeneID: 107931482
NCBI-ProteinID: XP_016718870
UniProt: A0A1U8LWC5
LinkDB
Position
D09:54136249..54139644
AA seq 509 aa
MSREVLAREAINHALKALNKRHLIEEGAHAPAYIALSRPIISQGSEWKEKAENLEMELQQ
CYKAQSRLSEQLVVEVAESRALKASLQEKETAIAELEKELNQTRDECSQLKTDLEEKIRA
LELLMIEHQQLKAQLEQMAIKAKNAEAENKMLVDRWMLQKMQDAERLNEANALYEDMIER
LKASGLEKLAREQVDGIVRRSEEGAEFFAESTVPSVCSHRINAHEGGCASILFEYNSSKL
ISGGQDRSVKMWDTSTGSLTHNLSGCLGSVLDLAITHDNRFVIAASSSNNLFVWDVSSGR
IRHTLTGHTDKVCAVDVSKVSSRHVVSAAYDRTIKVWDLQKGYCTNTIIFHSNCNALCFS
TDGLTICSGHVDGNLRLWDSRTGKLLSEVAAHSLPITSISLSRNGNVVLTSGRDNVHNLF
DGRSLEACGTFRATGNRVASNWSRSCISPDDNYIAAGSADGSICIWSISKADIVSTLKEH
TAPVLSCTWSGLGKPLASADKNGIVCTWT
NT seq 1530 nt   +upstreamnt  +downstreamnt
atgtcgcgagaggttttagcgagggaagctataaaccacgcgttgaaggcgctaaataaa
cggcatttaattgaagaaggagctcatgctcctgcttatattgctctttccaggcctatc
atctcccagggttcagaatggaaagagaaagcagaaaacttggaaatggaacttcaacaa
tgttacaaagcgcagtctagattgtccgagcaactagtggttgaagtagctgaatctcga
gctttaaaagcttctctacaagagaaagaaacggctattgccgaattggagaaggaattg
aaccaaaccagggatgagtgctctcagctaaagacagatttagaagaaaaaattcgagct
ttggaattgttgatgatcgagcatcaacaactgaaagctcaattagaacaaatggctatt
aaagctaaaaacgcggaggctgaaaataagatgttagttgatcgttggatgcttcaaaaa
atgcaggatgctgaacggcttaacgaggcaaatgcgctttacgaagatatgattgagcgg
ctaaaggccagtggtttagaaaaacttgcccgagaacaagtggatggtattgtccgtaga
agcgaagaaggtgctgagttctttgcggaatcaaccgttccttctgtttgctcacacagg
atcaatgcacatgaaggtggttgtgcttccatactgttcgagtacaactccagcaaattg
atcagtgggggacaggatcgatcggtcaaaatgtgggataccagtaccggatctttaacc
cataacctttccggttgccttggttctgtccttgatcttgcaattactcatgacaataga
ttcgtaatagcagcaagtagttcaaacaacttgtttgtatgggatgtcagctcaggacga
atccgacatactctcacaggtcacactgataaagtctgtgcagtagatgtaagcaaagtt
tcgagtcgtcatgtcgtgagtgctgcttatgatcgaacgataaaagtgtgggatctgcag
aaaggttactgcaccaacacgataattttccacagcaactgcaatgcactttgcttcagc
acagatggactgactatatgctccggtcacgtcgacgggaatctccgtttatgggacagt
cggaccggaaaattacttagcgaagtcgcggcacattcacttcccatcacatctatctct
ctgtcccgaaacggaaatgtcgtattaacgagtggtagggataatgtgcataatttattc
gacggacgatctttggaagcttgtggtacattcagagcaaccggaaatagggtagcatct
aattggagtcgctcgtgtattagtccggatgacaattatattgctgctgggtctgctgat
ggatccatatgcatttggtcgatatcgaaagccgacatagtaagcactttgaaggaacat
actgcacctgttctgtcttgtacatggagtggacttggaaaaccattagcctctgcagat
aagaatgggattgtctgtacctggacatga

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