Gossypium hirsutum (upland cotton): 107931533
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Entry
107931533 CDS
T04793
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 38
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03013
Nucleocytoplasmic transport
ghi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107931533
03015 mRNA surveillance pathway
107931533
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107931533
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107931533
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
107931533
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
107931533
NCBI-ProteinID:
XP_016718929
UniProt:
A0A1U8M071
LinkDB
All DBs
Position
A04:62907762..62911824
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AA seq
501 aa
AA seq
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MAETASNSAPSTSTTAEAPAPQETKKTTEAPVRWADMEDEASEEPSTSSEDKGAPELGVE
NLKIDESKKINKFLDEPEDSNIKAVTSGETPYTSAFTFEELNLSPELLKGLYVEMKFEKP
SKIQAISLPMILTPPHLDLIAQAHNGSGKTTCFTLGMLSRVDPNLKAPQALCICPTRELA
IQNLEVLRKMGKHTGITSECAIPMDSSNYIPINKRAPVIAQVVIGTPGTIKKWMSAKKLG
VSNVKILVFDEADHMLAEDGFKDDSLRIMRDIEKMSSHCQVLLFSATFSDTVKNFVSKIV
KRDHNQLFVKKEELSLESVKQYKVNVPDELSKVMVIKDRILEFGERLGQTIIFVRTRNSA
SMLHKALVEFGYDVTTIQGALNQAERDKIVKEFKDGLTQVLISTDLLARGFDQQQVNLVI
NYDLPVKHDNRVEPDCEVYLHRIGRAGRFGRKGAVFNLLCGDMDQMIISKIENHFDSKIA
EVPDWKNEEDFKTALRSAGLL
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaaccgcctctaactccgccccttctacctctaccaccgccgaggcgccagcg
cctcaagaaaccaaaaagaccaccgaggcaccagtaagatgggccgatatggaagacgaa
gcttcggaagaaccgagcacttcatcggaagacaaaggtgcgccggaactcggagttgaa
aacctaaaaatcgatgaaagcaaaaagatcaacaagttcctcgacgaacccgaggactcc
aacatcaaagccgtcacatctggggagacaccatacacttcagcatttacgtttgaggaa
ttgaatctgtcccctgaattgttaaaagggctatatgttgagatgaaatttgaaaagcct
agcaaaatccaagctattagtttaccaatgattttgacgcctcctcacttggatttaatt
gctcaagctcacaatggttctggtaaaaccacttgctttactcttggaatgctgtctcgt
gttgatccgaatctaaaagctcctcaagcactttgcatttgtcctactagagaactggct
attcagaatttggaagtgcttaggaagatggggaagcatactgggataacatcagaatgt
gctattccaatggatagttccaattatattccaattaataaacgggcacccgttatcgct
caagtagttattggtactcctggcactattaagaagtggatgtcagcaaagaaattgggt
gtgagtaatgtgaagattcttgtgtttgatgaagctgatcacatgctggctgaggatggt
tttaaagatgactccttgagaataatgagggatattgaaaagatgagttctcactgccag
gttcttctgttttctgccacatttagcgacactgtgaagaattttgtctcaaagatagtc
aagagagatcacaatcaactttttgttaagaaggaagaactatctttggagtctgtgaag
caatacaaggtgaatgttccagatgaactttccaaagttatggtgattaaagatagaatt
ttagaatttggagagcgcctagggcagactattatatttgtacgcacaaggaatagcgca
agcatgttgcataaagcacttgttgagtttggttatgatgttaccacaattcaaggtgct
ctcaatcaagctgaacgagacaagatagtcaaggaatttaaagatggtttgactcaagtg
ctcatttcaacggacctccttgcccggggttttgaccaacaacaggttaatttggtcatc
aactatgatcttcctgtgaaacacgacaaccgtgtggagcctgattgtgaggtttacttg
catagaattggcagagcaggacgttttggtcgcaagggagccgtgttcaacttactctgt
ggtgatatggaccaaatgataatatccaaaatcgaaaatcattttgacagcaaaatagca
gaggttcctgactggaagaatgaggaagactttaaaactgctctccggtcagccggttta
ttatga
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