Gossypium hirsutum (upland cotton): 107931785
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Entry
107931785 CDS
T04793
Name
(RefSeq) probable CCR4-associated factor 1 homolog 11
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107931785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107931785
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107931785
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107931785
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Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
GcvP2_C
Motif
Other DBs
NCBI-GeneID:
107931785
NCBI-ProteinID:
XP_016719205
UniProt:
A0A1U8LX99
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Position
D10:complement(67657647..67658412)
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AA seq
203 aa
AA seq
DB search
MSIFGNKSIVVRRVFAEDSDSELLMIKEAILTYPFLSIDIEFPGTIFKPSKQVIREGNPV
INYHYMKSNVDVLQIIQLGLSLSDAQGNLLDFDFPFSYIWEFNFRDFNINRDHYASDSIE
LFKHQGIDFEKNKEKGIDSKDFAKKFWDYGLHFRPQTYLQVFGAARQFRENSSNIKRSLY
YRIKSSSRVGQSIHTSMFYEVQE
NT seq
612 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatttttggcaataagtcgattgttgtgagacgggtttttgctgaagattcggac
agtgaacttttgatgattaaggaagcaattttgacgtatccttttctatctatagatatt
gaatttccagggacgatatttaaacctagtaagcaagtgattcgtgaaggtaatccggtt
atcaattatcactatatgaagtcaaatgttgatgtgcttcaaattattcaactcggcttg
agtctttcagatgctcagggtaatttactagactttgattttccattttcttacatttgg
gaatttaattttagagatttcaatatcaatcgagaccactatgctagcgattcgatcgag
ttgttcaaacatcaagggatagattttgagaagaataaagagaaggggattgattctaaa
gattttgcaaagaagttttgggattacggcttgcattttcgacctcaaacataccttcaa
gtttttggggctgctaggcagtttagagaaaatagctcaaacattaaacgtagcctgtat
taccggatcaagtcatcaagccgggtcggacaatctattcacacttcaatgttttatgaa
gttcaagagtga
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