Gossypium hirsutum (upland cotton): 107932071
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Entry
107932071 CDS
T04793
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like isoform X1
KO
K07466
replication factor A1
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03030
DNA replication
ghi03420
Nucleotide excision repair
ghi03430
Mismatch repair
ghi03440
Homologous recombination
ghi03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
107932071
03420 Nucleotide excision repair
107932071
03430 Mismatch repair
107932071
03440 Homologous recombination
107932071
03460 Fanconi anemia pathway
107932071
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ghi03000
]
107932071
03032 DNA replication proteins [BR:
ghi03032
]
107932071
03400 DNA repair and recombination proteins [BR:
ghi03400
]
107932071
Transcription factors [BR:
ghi03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
107932071
DNA replication proteins [BR:
ghi03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
107932071
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
107932071
MMR (mismatch excision repair)
107932071
DSBR (double strand breaks repair)
HR (homologous recombination)
107932071
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
DUF223
zf-like
Motif
Other DBs
NCBI-GeneID:
107932071
NCBI-ProteinID:
XP_040965329
UniProt:
A0ABM3BE46
LinkDB
All DBs
Position
D13:60331520..60334556
Genome browser
AA seq
629 aa
AA seq
DB search
MPVNLTRNAIAMMNSGDVNSKPLVQVVDIKLIGNSQERYRFLLSDSESTQHAMLATQLNE
QVRTGRVKKGSIIQLIDYICSTVQNRRIIVVLNMETIIPEYEIIGNPKLPTGSEPEANKS
MPNNNLLEPSTRSTNNRYSAPAPANKAQSFQPTIQPAYQPPPNYKIQGPIMKNEAPARII
PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDR
FYNVIEVGKVYLISKGSLKPAQKNFNHLKNEWEIFLESNSTVELCPDEDGSIPRQQFSFR
PITEIESAENNSILDVIGIVISVNPSVPILRKNGMETQRRILNLKDASGKSVELTLWGDF
CNKEGQKLQEMVDSGLFPVLAVKAGKVNDFNGKSIGTISSTQLFIDPDCPEAQGLRAWFE
SGGRNTASISISKELMPGGSKNEIRKTLTQIKDEGLGRSDKPDWVTAKATVVFIKTDNFC
YTACPLMIGDRQCNKKVTQSGNKRWLCDRCNQEFEECDYRYLLQVQIQDHTGLTWVTAFQ
EAGEEILGCSAKEMYLLKYELQDDTRFGEIIRSRLFHQYLFRLKIKEELYGDEQRVKITV
VKVDKVNYSAESRYLLDMVTKNFPNRKQF
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgccggtgaatctcacgcgcaacgcgattgccatgatgaacagcggcgatgttaactcc
aagccgttggttcaggtggtggatattaagctgattggcaactctcaggagaggtaccgg
tttttgttatccgattctgaatcaactcagcacgcaatgctcgccactcagctcaatgaa
caagtcaggaccggacgagtcaagaaaggatctatcatccagttgatcgattacatttgc
agcactgtccaaaatcgcaggattattgttgtgctgaatatggagactataattccagag
tatgaaataatcgggaatcctaaacttcctacgggttctgagccagaagctaacaagtca
atgcctaataacaatttgttggagccttctacgaggtccaccaataatagatatagcgcc
ccagctcctgctaataaggcccagagttttcagccaactattcaacctgcataccagcca
cctccaaattacaaaattcagggcccaataatgaagaatgaagcaccagcacgcattatt
cctattgctgctctaaatccttatcaaggacgttgggctatcaaggctcgagtgactgca
aaaggggaccttcgtcgctacaacaatgctagaggagatgggaaggtcttctcctttgac
ctccttgactctgatggaggggaaatacgggtgacttgcttcaatgctgttgttgatcgc
ttctacaatgttattgaagttggtaaagtttacttgatttcaaagggtagcttgaaaccc
gctcaaaagaatttcaaccatttgaagaatgagtgggagatattcttggaatcaaattca
accgtggagctttgccctgatgaagatggctctattccaagacaacagttctccttcaga
cctatcactgaaattgagagtgctgaaaacaattctatacttgatgttatcggtattgtg
atatctgttaacccttcagttcctattttgaggaagaatggtatggaaactcagagaagg
attctgaatttaaaggatgcatctggaaagagtgttgagctaaccctttggggtgatttc
tgcaacaaggaaggtcaaaagctgcaagaaatggtcgattctgggcttttcccagttttg
gcggttaaagctggaaaggtcaatgacttcaatgggaagtccattggcactatttcttcc
acacagctctttatagatccagattgtccagaggcacagggcctgagagcgtggtttgaa
agtggggggagaaatacagcttctatctcaatttctaaagaacttatgcctggaggatcc
aaaaatgagatacgtaaaaccttgactcagatcaaggacgaaggtctcggaagatctgat
aagccagattgggtcacagccaaggcgactgtagttttcattaaaacagataatttctgt
tatacagcctgcccattgatgattggagatagacaatgcaataagaaagtaacacaatca
ggtaataaaagatggctttgtgaccgttgcaaccaagaattcgaggaatgtgattacaga
tatcttctccaggtccagattcaagaccatacaggactcacttgggtaacagctttccag
gaagctggcgaagaaatcttgggatgctcggcaaaggaaatgtatttgttgaaatatgaa
ttgcaggacgatacccgatttggtgaaataattcgcagtcgactctttcaccaatatctg
ttcaggcttaaaataaaagaggaactctatggtgacgaacagagggtaaaaatcactgtg
gtgaaggttgacaaggtgaactactctgcagaaagcaggtaccttctcgatatggttaca
aagaattttccgaatagaaaacaattctga
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