Gossypium hirsutum (upland cotton): 107932162
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Entry
107932162 CDS
T04793
Name
(RefSeq) pre-mRNA-processing factor 19-like
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03040
Spliceosome
ghi04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107932162
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
107932162
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ghi03041
]
107932162
04121 Ubiquitin system [BR:
ghi04121
]
107932162
03400 DNA repair and recombination proteins [BR:
ghi03400
]
107932162
Enzymes [BR:
ghi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
107932162
Spliceosome [BR:
ghi03041
]
Complex B
Other components
Prp19 complex
107932162
Complex C
Prp19-CDC5 complex
107932162
Ubiquitin system [BR:
ghi04121
]
Ubiquitin ligases (E3)
U-box type E3
107932162
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
107932162
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_WDR5
Beta-prop_THOC3
WD40
Beta-prop_WDR3_1st
Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
Beta-prop_WDR36-Utp21_2nd
EIF3I
WD40_Gbeta
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
Beta-prop_EML
Beta-prop_IFT140_1st
Beta-prop_WDR75_1st
Beta-prop_DCAF12
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_WDR19_1st
Beta-prop_EIPR1
Beta-prop_SPT8
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_SCAP
NBCH_WD40
Beta-prop_DCAF4
Beta-prop_Aladin
U-box
Beta-prop_WDR41
PEP5_VPS11_N
Beta-prop_RIG_2nd
zf-Nse
WD40_like
Beta-prop_ACSF4
PAS_11
PUMA_CC
WDR54
Motif
Other DBs
NCBI-GeneID:
107932162
NCBI-ProteinID:
XP_016719601
UniProt:
A0A1U8LYD4
LinkDB
All DBs
Position
D02:6150359..6156703
Genome browser
AA seq
519 aa
AA seq
DB search
MNCSISGEVPEDPVVSKKSGLLYEKRLIERHIADYGKCPVTGEALTMEDIVPIKTGKNVK
PRSLTAASIPGMLGMFQNEWDALMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK
ERDEAGSLLAQAERQAPLPASAITAVSNGKRASEEEDMGPGAKRMRHGVSDSIIAELTEC
NAALSQQRKKRQIPPTLAPIDALERYTQLSSHPLHKTNKPGITSIDINPSKDIVATGGID
SNAVLFGRTSGEILSTLSGHSKKVTSVKFVAHNDVFLSGSADKTVRIWQGSEDGNYNCRH
ILKDHSAEVQAVTVHATNNYFVTASLDATWCFYDLSSGLCLTQVEDPTNSMGYTSAAFHP
DGLILGTGTIGSTVRIWDVKSRGNVANFDGHTGAVTAISFSENGYFLATAAHDGVKLWDL
RKLKNFRSFELYDQDTPTNSVDFDHSGSYLAMAGSDIRVYQVGSVKAEWNCIKTLPDLSG
TGRATCVKFGPDARYLAVGSMDRNLRVFGLPEEDASTES
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atgaactgttcaatctccggcgaggttccggaagatcccgtcgtctccaagaaatccggc
ttgctttatgagaaacgcttaatcgagcggcacattgcggactatgggaagtgtccggtt
acaggggaagcgcttaccatggaggacattgtcccaatcaaaaccggcaagaatgtgaag
cccagatctttaacagcagctagcatcccagggatgcttggaatgtttcagaatgaatgg
gatgctttgatgctatccaatttcgcattggagcagcagctgcatacagctaggcaagag
ctaagtcatgcactctaccagcatgatgctgcctgccgtgttattgcaagacttaaaaag
gaaagggatgaagccgggtcattacttgcacaggctgagaggcaggcacctttgcctgca
tccgcaattactgctgtgagcaatggaaagagagcttctgaggaagaagatatgggccct
ggtgcaaagagaatgcgtcacggggtttctgatagtattattgctgagttaacagaatgt
aatgctgctttgtctcaacaacgtaaaaagcgccagatacctccaacactagctcccatt
gatgctttggagaggtatactcaactttctagtcatccccttcacaagacaaacaaacca
gggatcacttcaattgacattaatccttcaaaggacattgttgccacaggtgggattgat
tcaaatgctgttttatttggtcgaacatctggagagatcttatcaacactcagtggtcac
tctaagaaggttacaagtgtaaaattcgtggctcataatgatgtatttttaagtggttct
gcagataagactgtacgcatttggcaaggttctgaagatggaaactacaattgtaggcat
attttgaaagatcattcagctgaggtgcaagctgtcacagtccatgccacaaataactac
tttgtaactgcttcgcttgatgcaacatggtgcttttatgatctttcctctggcttatgc
ttgacacaggttgaagaccctacaaattccatgggttatacatctgctgcatttcatccc
gatggtctcatccttggaacaggcaccataggatctaccgttagaatttgggatgtgaag
agtcggggaaatgttgctaactttgatggacacactggtgcagtaacagccatatctttt
tcggaaaatggttacttcctagcaactgctgcacatgatggtgttaagttgtgggatcta
cgtaaattaaagaatttccgttcttttgagttatatgatcaagacacgccgactaactct
gtggatttcgatcatagtgggagttaccttgcaatggcaggctcagatatacgagtttac
caagttggcagcgtgaaagcagaatggaattgcatcaaaactttacctgacttgtccggc
acaggtagagcaacttgtgtcaaatttggtcctgatgcaaggtacttggcagttggatca
atggatcgtaaccttcgggtatttggccttccagaagaagatgcttcaacagagtcataa
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