Gossypium hirsutum (upland cotton): 107932237
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Entry
107932237 CDS
T04793
Name
(RefSeq) protein CTR9 homolog
KO
K15176
RNA polymerase-associated protein CTR9
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
107932237
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
PAF1 complex
107932237
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_12
TPR_8
TPR_19
TPR_14
TPR_16
TPR_17
TPR_11
TPR_6
TPR_CcmH_CycH
TPR_9
TPR_7
ANAPC3
ARM_TT21_C
ARM_TT21_5th
TPR_10
TPR_Slam
NatA_aux_su
DUF6584
Motif
Other DBs
NCBI-GeneID:
107932237
NCBI-ProteinID:
XP_016719691
UniProt:
A0A1U8LYM6
LinkDB
All DBs
Position
D07:1661103..1671422
Genome browser
AA seq
1096 aa
AA seq
DB search
MACVYIPVQNSEEEVRVALNQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFR
QILEEGSSPEIDEYYADVRYERIAILNALGAYYSYLGKIETRQREKEEHFILATQYYNKA
SRIDMHEPSTWVGKGQLLLAKGEVEQAFSAFKIVLEGDRDNVPALLGQACVEFNRGRYAD
SLELYKRALQVYPNCPGAVRLGIGLCRYKLGQFQKARQAFQRVLELDLENVEALVALAIM
DLQANDAAGIQKGMDKMRRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH
GPTKSHSFYNLARSYHSKGDFEKAGFYYMASIKEINKPQEFVFPYYGLGQVKLKSGDFRT
ALSNFEKVLEVYPDNCETLKALGHIYVQLGQVDKAQEFMRKATKIDPRDAQAFLDLAELL
ISSDTGAALDAFKTARNLLEKGGQAVPVEVLNNIGVLHFEREELELALESFNKALGDGVW
LALTGNKRKPYVIEASASILDYKDMQVFHRLEEDGLAVELPWNKVTVVFNLARLHEQLHN
TGIANILYRLILFKYPDYIDAYLRLAAIAKARNNLQLSIELVNEALKVNDKCPNALSMLG
DLELKNDDWVKAKETLRSASDATDGKDSYAILSLGNWNYFAAIRNEKRNPKLEATHLEKA
KELYTRVLVQHTDNLYAANGAAVVLAEKGQFDVSKDIFTQVQEGASGSVFVQMPDVWINL
AHIFFAQGNFALAVKMYQNCLRKFYYNTDSQILLYLARTHYEAEQWQECKKTLLRAIHLA
PSNYTLRFDAGVAMQKFSTSTLQKEKRTADEVRSTVAELENAVRIFSQLSAASNLHLHGF
DEKKINTHVEYCKHLLEAAKVHREAAEREEQQNRQKQEAARQLALAEEARRKAEEQRKYL
LERRKQEDEQKRLQQAEEHFKRVQEQWKSSNPGSRRRDRSEIDDEEGGHSEKRRRKGGKR
RKKDKNKSRYERDDEEPDMMDDREEMEDEDANRNYRESTTRMNDQDDDNGENAQDLLAAA
GLEDSDMEDETAAAPSSAAGRRRRAWSESDDDEPVQRRPESSPVRGNSAELQESDGEIRE
DNRKPNGGDALDEDED
NT seq
3291 nt
NT seq
+upstream
nt +downstream
nt
atggcgtgcgtgtatataccggttcaaaactcagaggaagaagtacgggtggctctgaat
caacttccccgagatgcttctgatattcttgatatccttaaagccgagcaagctcctctc
gatctttggctcatcatcgcgagggagtactttaaacaagggaaggttgaacaatttcga
caaattctggaagaaggatccagtcctgaaattgatgaatattatgctgatgttagatac
gagaggattgctatcctaaatgctttaggggcttattacagctaccttggaaaaattgag
acaagacaaagagaaaaagaagaacattttattttggctacacaatattacaataaagca
tcgagaattgatatgcatgagccttcgacttgggttggcaaaggtcagcttctcctggca
aaaggtgaagtagaacaggcattttctgcgtttaagattgtattggaaggagatcgagat
aatgttcctgctcttcttggtcaggcatgtgttgagttcaatcgtggtcgttatgctgat
tcattggagttatataagagggccttgcaagtgtatcctaattgtcctggggctgtcaga
cttgggattggtctctgtcgatataaattgggtcaatttcaaaaggctagacaggcattt
cagcgggttttagagttagacttggaaaatgttgaagctctggttgctttggcaatcatg
gatttgcaagcaaatgatgctgctgggatccagaaaggcatggacaaaatgcgaagagct
tttgagatatacccctattgtgcaatggcactaaattatctggcaaatcactttttcttc
actggacaacactttttagttgagcaactgactgaaactgctcttgctgtcacgaatcat
ggaccaacaaaatcacattctttctataatctagcacgctcttatcatagcaagggggac
tttgaaaaagctgggttctattacatggcatctatcaaggaaatcaataagccccaagaa
tttgtgtttccttactatggtttgggacaagtgaaacttaaatcaggagattttaggact
gcactttcgaactttgaaaaagttttagaggtttaccctgacaattgtgagacattaaag
gcacttgggcacatatatgttcagcttggtcaggttgataaggcccaagaatttatgaga
aaggccacaaaaattgatccccgtgatgcacaggcatttcttgatctagcggagttgtta
atttcatccgacacaggagctgctcttgatgccttcaagacagcacgtaatcttctggaa
aagggaggtcaagctgtgccagtagaagtgctcaacaacattggcgttctacattttgag
agggaagaacttgagcttgctctggaaagtttcaacaaggctctgggagatggtgtgtgg
cttgctttaactggaaataagcgaaaaccctatgttattgaagccagtgcgtccatcttg
gactacaaggatatgcaagtattccatcgacttgaggaagatggtcttgctgtggaacta
ccctggaataaagtaacagttgtatttaaccttgccagattacatgagcagctgcataac
acaggaattgcaaacatattatatcgcttgatattattcaagtatccagactacattgat
gcttatctgaggcttgctgccattgcaaaagctcgaaataatcttcaattaagcattgaa
ctggttaatgaggcactgaaggtgaatgacaaatgccccaatgcattatccatgcttggt
gatttggagcttaagaatgatgactgggttaaagcaaaggaaacattgcgttctgctagt
gatgcaaccgatgggaaggattcttatgctattctttctctggggaactggaactacttt
gcagcaattcgcaatgagaaaagaaatcccaagttggaagctacccatttggaaaaagcc
aaggaactatatacaagagtccttgttcagcatacagataatttatatgctgctaatggt
gctgcagtagtattggcagaaaaaggccagtttgatgtttcaaaagatatttttactcag
gtccaagaaggtgcaagtgggagcgtttttgtccaaatgccagatgtatggataaacttg
gctcatattttcttcgctcaaggaaattttgctttggctgtaaaaatgtatcaaaattgc
ctgcggaagttctattataatacggactcccaaattcttctatacttagctaggacgcat
tatgaagctgaacaatggcaagaatgcaagaaaactttattgagagccatccacttagct
ccttcaaactacacattacggtttgatgcaggagtagcaatgcagaaattctcaacatca
acactacagaaggaaaagaggactgcagatgaggttcgttcaacagttgcagagctagag
aatgctgttcgcatttttagtcaattatctgctgcatcaaaccttcatcttcatgggttt
gatgagaagaagattaacacccatgttgaatattgcaagcacttgcttgaagctgcaaaa
gttcaccgggaagccgctgaacgtgaagagcagcagaacaggcagaaacaagaagcagct
cgtcagcttgcattggccgaggaagcccgtcgtaaggccgaagagcaaagaaaatatctg
ttggagagaagaaaacaggaagatgagcagaaaaggctccagcaggcggaggaacatttt
aagcgcgtacaggagcaatggaagagtagcaaccctgggtcgaggcgaagggacaggtct
gaaattgatgatgaagagggtggccatagtgagaagaggagaagaaaaggtggaaagagg
agaaagaaggataaaaacaaatcacgttacgagagagatgatgaggaacctgacatgatg
gatgatcgggaagaaatggaggatgaagatgccaacaggaactatcgagaatccacaact
cgaatgaatgatcaggatgacgacaatggtgaaaatgctcaagatcttcttgctgcagcc
ggattagaagattccgatatggaggatgagacggccgctgcaccttcatcagctgcagga
agacgtagaagggcatggtcagaatctgatgatgatgaaccggtacaaaggagaccagag
tcaagtcctgttagagggaattcagccgagctacaagagagcgatggagaaattagagaa
gataatcgtaaaccaaacggaggtgatgcgcttgacgaggatgaagattga
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