Gossypium hirsutum (upland cotton): 107932485
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Entry
107932485 CDS
T04793
Name
(RefSeq) uncharacterized protein LOC107932485
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107932485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ghi03000
]
107932485
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107932485
04121 Ubiquitin system [BR:
ghi04121
]
107932485
Enzymes [BR:
ghi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
107932485
Transcription factors [BR:
ghi03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
107932485
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107932485
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107932485
Ubiquitin system [BR:
ghi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
107932485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Baculo_IE-1
PcfJ
FYVE
Motif
Other DBs
NCBI-GeneID:
107932485
NCBI-ProteinID:
XP_040955252
LinkDB
All DBs
Position
D08:111604..117910
Genome browser
AA seq
1038 aa
AA seq
DB search
MSDEGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDNTEGRCPACRSVY
DKDKIVGMAANCERLVVGNNSERKMKSQKPKAKSSEGRKQLSSVRVIQRNLVYIVGLPLD
LADEDLLQQLEYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAIRCIQSVH
GFVLEGRPLKACFGTTKYCHAWLRNMPCNNPDCLYLHEIGPQEDSFTKDEIISAYTRNRV
QQITGATNNMQRRAGNTLPPPVDDYCPNSSASAAKSVSKSAPNNTTVSISRCSPPNGSSG
RSIALPAGASWGMRALNQPQSTILACSNGPSKLKSDIDSNTIPFSSAGTNTNQSCTLHVD
ARKKSSEEIHSMSMKGKPDLLKPLQQTAGFAVEKPPSPDIVSASKSLSSQLSCPPASSYN
DQVANVPSTATNSVFDHEQSLSSPVGEVGSTSTADGKIQSLCSDMSTLTLDKNLLNGHSD
LVRPSSSASGYGSSNSPSSQGLQQRCTELYSEHLSSPVAGRSMTSHNGVCVSQEQSDWRT
QTQVVENTSSEVEEDVLSFDNQRIKDPEVISHSSYLPNSTVSLHLSDHSRAHSLQHSETF
GAVNMNADTPLVDNKVRDNLHPHGSRISSLSNEYPEKYISSGISSDITSGGFLPLLNEEQ
GKQMGKPLGNAECNTGKDTGENSIISNILSLDFDTWDESLTSPQNLAKLLGDTDKESNSL
KLSSSWKALNNNQSRFSFARQEDSKYNSFDADSSFGVFGQMLRNHPSSQDFAESRDLYPN
KFGISNGFSSSNFKDSDKFTSSPSVFSSNKLSAVSRTQISAPPGFSVPSKAPPPGFSYHE
RVDPVFDTVSENHLMDSSSLLRNSYQARTSVGIGGPGDIEFIDPAILAVGKGRHQGGLSN
AGLDMRPNFQPQLSPLDDEARLQRLMQRSLSRHQNLRYDIGDNFSSLNDSYGITSRLMDQ
SQVNMSPFAQLSLQQSRNSHMSNGHWDGWNDIQGGSNLGVAELLRNERLGFNKFYSGYED
SKYRMPSSGDLYNRTFGM
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacgagggagaaaagacctgccccctttgcgctgaggagatggatttgactgat
cagcaactcaagccttgcaaatgtggttatgagatctgtgtttggtgttggcatcacata
atggatatggctgagaaggataacacagaggggaggtgtccagcatgtcgtagcgtttac
gataaagacaagattgttggcatggctgcaaattgtgagaggttggttgttggaaataat
tcagagagaaaaatgaagtcacaaaagccaaaggctaaatcatctgaaggaaggaagcaa
ctgagcagtgtgcgagttatccaaaggaatcttgtttacatagtcgggttgccacttgat
ctggcagatgaagatcttctccaacagctagaatattttggccaatatgggaaagttctt
aaagtgtccatgtctcggactgcagctggtgtcattcagcaatttccaaacaatacatgt
agtgtatatattacttactcaaaagaagaggaagcaattcgctgtatccagtctgtacat
gggtttgtcttggagggtagaccattaaaggcatgctttggtaccacaaagtattgtcat
gcatggctgagaaatatgccttgcaacaatcctgattgtctgtatttgcacgagattggt
cctcaagaggatagtttcacaaaagatgagattatatcagcatacacaaggaatagggtt
caacaaataactggtgcaacaaacaatatgcaacggcgtgctgggaatacattacctcca
ccagtggatgattactgccccaatagttctgcttctgcagcaaaatctgtttctaaaagt
gctccaaacaatacaacggtgagcatttctagatgttctcccccaaatggaagctccggt
agatccattgcgcttcctgctggagcatcatggggaatgcgggctttaaaccagccacaa
tcgaccattttagcttgttccaatggaccttctaagctgaaatctgatatagatagcaac
acaataccattttcatctgcaggaacaaacacaaatcagtcttgtacattacatgttgat
gctagaaagaagtcatctgaggagattcattctatgagtatgaagggtaaacctgatttg
ttaaaacctttacaacagactgccggtttcgcagtagagaaacctccatcacctgatata
gtttctgcttctaaatcattgagcagccagttatcttgcccaccagcatccagttataat
gaccaggttgctaatgtaccatcaactgctactaactccgtctttgatcatgaacaatca
ttaagttcacctgttggggaagtagggagtacttccactgctgatgggaagatacagagc
ttgtgctctgatatgtcaacattgaccttagacaagaatctattgaatggacattctgat
ttagttagacctagcagttcagcttctggttatggatcaagcaactcacctagtagtcag
gggttacaacaacgttgtactgagctctattcagaacatttaagttcaccggttgctggt
agatctatgacatctcacaatggggtgtgtgtttcacaagagcagtctgattggagaact
caaactcaagtagtggaaaatacaagctccgaagtagaagaagatgtattatcttttgat
aatcaaagaatcaaggatccagaagtaattagccattcgagttacttgccaaattcaaca
gtttcgctccatttatcagatcattccagggcccattccttgcaacatagtgagactttt
ggtgctgttaatatgaatgctgatactccccttgtagataataaagttcgtgacaattta
catcctcatggatctcgtatttcttctttgtcaaatgaataccctgagaagtacataagt
agtggtattagttctgatattacctctggaggtttccttccgcttttaaatgaagagcaa
gggaagcagatggggaaaccactcggtaatgctgagtgcaatactggcaaagatacagga
gagaacagcataatttcaaacatattgtcactagattttgatacatgggatgaatcctta
acttcaccacagaacttggctaaattgcttggggacactgacaaggagtccaattctctc
aaattatccagttcgtggaaagcactgaataacaatcagtccagattctcatttgcaaga
caggaggattccaaatacaattcatttgatgctgactcctcatttggtgtttttgggcaa
atgctacggaaccatccttctagccaagattttgcagaaagcagggatctctatccaaat
aagtttgggatttcgaatggtttttcttccagtaactttaaggattctgacaaatttacc
agcagtccttcagttttctcttctaataagctttctgcagtttcaagaactcaaatttca
gccccacctggattttctgttcctagcaaggcaccacctcctggtttttcttatcatgag
agggtagacccagtctttgacactgtatctgaaaatcacttgatggactcttcatccctg
ttaagaaattcttatcaggctcggacaagtgttggcattggtggccctggagacatagaa
tttattgatccagcaattttggcagttggtaagggtagacatcaaggaggcctcagtaat
gcaggcttagacatgagaccaaattttcaaccacagttaagtccccttgatgatgaggcc
aggcttcaacgattgatgcagaggtctctttctcgtcatcaaaacctaagatatgatatt
ggagataacttttcttctcttaatgactcatatggaattacttcaaggctgatggatcaa
tcacaagtgaacatgtccccatttgcacagttgtctctccaacagtcaagaaattcacac
atgtcaaatggtcattgggatggatggaatgatattcaaggtggaagcaatcttggtgtg
gcagagctccttagaaacgagagactgggatttaacaagttctattccggttatgaagat
tcaaagtacaggatgcccagttcaggtgatctgtataacaggacatttggaatgtga
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integrated database retrieval system
