KEGG   Gossypium hirsutum (upland cotton): 107932501
Entry
107932501         CDS       T04793                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB7
  KO
K03015  DNA-directed RNA polymerase II subunit RPB7
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03020  RNA polymerase
ghi03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    107932501
  09124 Replication and repair
   03420 Nucleotide excision repair
    107932501
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ghi03021]
    107932501
   03019 Messenger RNA biogenesis [BR:ghi03019]
    107932501
   03400 DNA repair and recombination proteins [BR:ghi03400]
    107932501
Transcription machinery [BR:ghi03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     107932501
Messenger RNA biogenesis [BR:ghi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     107932501
DNA repair and recombination proteins [BR:ghi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      107932501
SSDB
Motif
Pfam: SHS2_Rpb7-N S1
Other DBs
NCBI-GeneID: 107932501
NCBI-ProteinID: XP_016720009
UniProt: A0A1U8M385
LinkDB
Position
D08:complement(374731..378028)
AA seq 176 aa
MFFHIVLERNMQLHPRHFGRNLRENLVSKLVKDVEGTCSGRHGFVVAITGIENVGKGLIR
DGTGFVTFPVKYQCVVFRPFKGEILEAAVTMVNKMGFFAETGPVQIFVSNHLIPDDMEFQ
SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPTTA
NT seq 531 nt   +upstreamnt  +downstreamnt
atgttttttcacatagtattagagaggaacatgcaattgcatccacgccacttcggtcgt
aacctacgggaaaacctcgtatccaagctcgtgaaagatgtcgagggcacttgcagtggt
agacatggttttgtggtggcaataacgggtatcgaaaacgttgggaaaggtttgattcga
gatgggaccgggtttgtgacattccctgtgaagtatcaatgtgttgttttcagaccattt
aaaggggaaatcttggaagctgctgttactatggtgaacaagatggggttctttgccgaa
accgggcctgttcaaatttttgtttcgaaccatttgattccggatgatatggagttccaa
tcgggagatatgccaaattatactacatctgatggatcggttaagattcaaaaggacagt
gaagttcgcttgaagataattggaactcgagtagatgctactgaaatattttgtattgga
accataaaggatgatttcttgggtgtgattaatgatccgacaacagcttaa

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