Gossypium hirsutum (upland cotton): 107932564
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Entry
107932564 CDS
T04793
Name
(RefSeq) E3 ubiquitin-protein ligase UPL3
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
107932564
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ghi04121
]
107932564
Enzymes [BR:
ghi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
107932564
Ubiquitin system [BR:
ghi04121
]
Ubiquitin ligases (E3)
HECT type E3
107932564
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
TPR_TRIP12_N
Arm
HEAT_EZ
ARM_ARMC5
Motif
Other DBs
NCBI-GeneID:
107932564
NCBI-ProteinID:
XP_016720099
UniProt:
A0A1U8M3H3
LinkDB
All DBs
Position
A12:complement(6640287..6649436)
Genome browser
AA seq
1905 aa
AA seq
DB search
METRSRKRAEASSAAPSSSPSGPTTRSHKRVRLSSSSAATAATVAVTRSRTSRTSRTSAA
LMDPSTIESSSGSRRDRRSSKANQTTTSDNPNLASDRGKEKEHDPRIRDRDRDRDNRDNN
NSNHPERNLGLNMDTSGGDEDDNDSEGGVGILHQNLTSASSALQGLLRKLGAGLDDLLPS
SAMGSGSSSHQSGRLKKVLSGLRADGEEGRQVEALTQLCEMLSIGTEESLSTFSVDSFVP
VLVGLLNHESNPDIMILAARALTHLCDVLPSSCAAVVHYGAVSCFCARLLTIEYMDLAEQ
SLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADYVM
EAVPLLTNLLQYHDSKVLEHASVCLTRIAEAFASSPDKLDELCNYGLVTQAASLISISNS
GGGQASLSTPTYTGLIRLLSTCASGSPLGAKTLLLLGISGILKDILSGSGVSANSSVSPA
LSKPAEQIFEIVNLANELLPPLPQGTISLPASSNIFVKGSILKKSPTGSSGKQEDTNRNA
LEVSPREKLLNNQPELLQQFGVDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMI
QNLLSVTNISSFLAGVLAWKDPYVLVPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLV
LIGNQNTTPVQASSLEKDNESVSGASSRSRRYRRRSGNSNLEGSSMEESKNPASLNIGSP
TNSVEIPTSNSSLRTAVSACAKAFKDKYFPSDPGAVEVGVTDDLLHLKNLCMKLNAAVND
QKAKAKGKSKASGSPWVDFSTSNEEYLTGVISEMLAELSKGDGVSTFEFIGSGVVAALLN
YFSCGYFSQERISDVHLPKLRQQALKRYKSFISVALPSSVDEGSMAPMTVLVQKLQNALS
SLERFPVVLSHSSRSSSGSARLSSGLGALAQPFKLRLCRAPREKSLRDYSSNIVLIDPLA
SLAAVEEFLWPRVQRSDTSQKLSVTVGNSESGNTPNRTDVSSPSTSTPASTTRRHSSRSR
SSVNIGDVARKEQSQEKSTSSSKGKGKAVLKPSKEEPRGPQTRNAARRRAALDKDAPMKP
VNDDSTSEDEELDMSPVEIDDALVIEDDDISDDEDDEHEDVLRDDSLPVCTPDKVHDVKL
SDSAEDGSPAPAASDSQTNAASGSSSRAAAIRGSDSADFRSGYGSRGAMSFAAAAMAGLG
SANGKGIRGGRDRQGRPPGSSNEPPKLIFTAGNKQLNRHLTIYQAIQRQLVLDEDDDERD
AGSDFTSSDGRGVWSDIYTITYQRAESQADRSSPGGSGSATASKSGKSGSSNSSSDPQPR
RMSLLDSILQGELPCDLDRSNPTYTILALLRVLEGLNQLAPRLRAQIVSDNFAEGNVLTL
DELSTSGSRVPHEEFINGKLTPKLARQIQDVLALCSGSLPSWCYQLTKACPFLFPFETRR
QYFYSTAFGLSRALYRLQQHQGADGQGSTNEREVRVGRLQRQKVRVSRNRILESAAKVME
MYSSQKTVLEVEYFGEVGTGLGPTLEFYTLLSHDLQKVGLAMWRSNSTWNKTVMEIDGDG
DKNGKSAGSATIDRDIVQAPLGLFPRPWPPNADASEGSQFFKVIEHFRLVGRVMAKALQD
GRLLDLPLSTAFYKLVLGQELDLHDILSFDAEFGKILQELHLLVCRKQYLDSLGGDNSDA
IADLRFRGASIEDLCLDFTLPGYPDYILKLGDETVDINNLEEYISLVVDATVKTGIMHQI
EAFRAGFNQVFDISSLQIFTPQELDYLLCGRRELWEAETLADHIKFDHGYTAKSPPIVNL
LEIMGELTPEQQRAFCQFVTGAPRLPPGGLAVLNPRLTIVRKHSSSATAAAAANGTGPSE
SADEDLPSVMTCANYLKLPPYSTKEIMYKKLLYAINEGQGSFDLS
NT seq
5718 nt
NT seq
+upstream
nt +downstream
nt
atggaaactcggagccggaagcgggcggaggcctcctcagctgccccttcatcttctccc
tccggtcccaccactcgctctcataaacgcgttcgtctctcttcctcctctgccgctacc
gccgccactgtcgctgttactcgctcccgtacttcccgcacatcacgtacttccgctgcc
ttaatggaccccagtacaatcgaatcttcttccggttcccgccgtgatcgccgttccagc
aaagctaaccaaaccacgacaagtgacaatccgaatcttgcctctgatagaggaaaggaa
aaggaacatgatcctaggattcgcgatagagatagagacagggacaatagagacaacaac
aattctaatcatcctgagagaaatttaggattaaatatggatacctctggaggcgatgag
gatgataatgatagcgaaggcggtgtagggattttgcaccagaatctgacgtcagcgagc
agcgcgttacaaggcttgttgaggaagcttggtgctggacttgatgatttgcttccctca
tcggcaatgggttccgggtcttcatctcatcaaagtgggaggttaaaaaaggttctgtct
ggattgcgtgctgatggagaggaagggaggcaagtggaggcgctgacccagctctgtgaa
atgctttcaattggtactgaggaatcgttgagcacgttttctgttgattcctttgttccc
gtgctcgttggattgcttaatcacgagagtaatcctgatatcatgattcttgctgcaagg
gcgcttactcatttgtgtgatgtgttgccttcttcatgtgctgctgttgtgcattatggt
gctgtttcatgtttttgtgctaggttgctcactatagagtatatggacttggctgaacag
tctctgcaagctctgaagaagatatctcaagaacacccaactgcctgtctgcgagctggt
gctctcatggcagtgctttcatacttggatttcttctccactggggttcagcgagtggca
ctatctactgctgcaaatatgtgcaagaaactcccttcagatgctgctgattatgtcatg
gaagctgtaccactattaacaaatcttttgcagtatcatgattcgaaggtgctggagcat
gcatctgtttgtttaacgcgcattgctgaagcctttgcatcttccccggataaattagat
gagctttgcaattatggactggttactcaggctgcatctctcatttccataagtaattct
ggaggtggacaggcatcattgagcacaccaacatatacgggcttaattcggctgctctca
acttgtgcaagtgggtctcccttgggagcaaaaactttacttctgcttgggatcagtggc
atacttaaagatatactatcaggttctggtgtttcggctaactcatctgtttcacccgca
ttaagcaagccggcagagcagatttttgagattgtcaatctggcaaatgagcttcttcct
ccattgccacaaggaaccatctccctccctgctagctctaatatatttgtgaaaggatct
attttgaagaagtctcctactggcagctctggtaagcaagaagacaccaatcgaaatgct
cttgaggtttcaccccgtgagaaattattgaataatcaacctgaacttcttcagcagttt
ggagttgatctccttcctgttctcattcagatctatggttccagtgtcaatagccctgtt
cgccacaaatgtctctcagttattggaaaactaatgtacttcagcagtgcagagatgatt
cagaatctattaagtgtgacaaatatatctagcttcttggctggtgttttagcatggaaa
gatccatatgtcttggttccttccctgcaaattgctgagatcctcatggaaaagcttcct
ggaactttctccaaaatgtttgttcgagagggcgtggttcatgctgtggaccagcttgtt
ttaattggtaatcaaaataccactcctgttcaagcatcttcacttgagaaggataatgag
tctgtatctggagcttcatcacgttctaggcgatacagacgacgtagtggtaactctaat
cttgaaggaagttctatggaggagtccaagaatccagcatctttaaatattggctcacct
actaattcagttgaaattcctacatccaattccagtcttcgtactgcagtaagtgcatgt
gctaaagcatttaaagataagtatttcccctctgatcctggggctgttgaagttggagta
acagatgatctgttacacttaaaaaatctttgcatgaaattgaatgctgctgttaacgat
caaaaggccaaggcaaaaggaaaatctaaagcttcagggtctccatgggttgatttttct
actagcaatgaagagtatttgactggggtgatttctgagatgctagcagaactaagcaag
ggggatggtgtatccacttttgagtttattggtagtggtgttgttgcggccttgttaaac
tatttttcttgcgggtacttctcccaggagagaatttcagatgtgcaccttcccaagctt
cgtcaacaagcccttaagagatacaaatcgtttatcagtgttgctcttccttctagtgtt
gatgaaggaagtatggctcctatgactgtcctggttcagaagcttcaaaatgctttatca
tctttagagcgttttcctgtagttcttagccattcatctaggtcatctagtgggagtgca
cgcctctcttctggtttaggtgcattagctcagccttttaagttgcggctctgtcgagcg
ccaagagagaagtctcttcgtgattattcttcgaatattgtgttgattgacccattagca
agtctagcagctgttgaagaatttctttggcctcgagttcaacgaagtgacacttctcag
aaactctctgtgactgttggaaattctgagtctgggaacacacctaaccggactgatgta
tcttctccgtctacctcaactcctgcttctaccacccgacgccattcttcaaggtccaga
tcatctgttaatattggagatgtggccagaaaggagcaatcacaggagaaaagcactagt
tcatcaaagggaaaaggtaaggctgttttgaagccttctaaagaggagccaagaggacct
caaacaagaaatgctgctcgtagaagagctgctctggataaagatgctccaatgaaacct
gtaaatgacgactctacttctgaggatgaagaattggatatgtcccctgtggagattgat
gatgctttggtgattgaagatgatgatatttctgatgatgaagatgatgaacatgaagat
gtgcttagggatgattctcttccagtttgtacacctgataaagtacatgatgttaagttg
agtgattcagctgaagatggttcacctgctccagctgcaagtgatagccaaactaatgca
gcttcaggatctagcagcagagctgctgctattaggggttcagactctgctgattttagg
agtggctatggctcaaggggtgcaatgtcgtttgcagctgctgccatggctgggcttgga
tctgccaatggtaaaggtattaggggaggtagagatcgacaaggaagacctcctggcagt
tctaatgagcctccaaagttgatattcactgctggtaataagcagcttaacaggcatttg
accatctatcaggccattcaaagacagcttgtgttggatgaggatgatgatgagagagat
gctggtagtgattttacatctagtgatggaagaggagtgtggagtgatatctacacaata
acatatcagagggctgagagccaagctgatcgatcatcaccagggggatcaggttctgct
acagcatctaaatctggtaaatctggttcatccaattccagctctgatccccaacctcgt
agaatgtctctattagatagcatattgcaaggggaacttccttgtgatctagacagatcc
aatcctacttatactatattggcactgttgcgtgtgttagagggtctgaatcagcttgca
cctcgtttgagagctcagattgtttctgataattttgctgagggaaatgttttaactctg
gatgagttgagcacctccggttctagagttcctcatgaggaatttattaatggtaagctg
actccaaaactggcgcggcaaattcaggatgttcttgctctatgtagtggaagccttcct
tcctggtgttaccagttgacaaaggcatgcccctttttatttccttttgagacacgaagg
cagtacttctattcaactgcctttgggttgtctcgtgcattatatcgtctgcagcagcat
caaggtgctgatggccaagggtcaactaatgaaagagaggtaagggttgggagattacag
aggcagaaagttcgtgtctcccggaaccgcattttggagtctgctgcaaaggtgatggag
atgtattccagccaaaaaactgtgcttgaagttgaatattttggagaagttggcaccgga
ttgggtccaaccttggagttttatacgcttttaagtcatgacttgcaaaaggttggactt
gcaatgtggaggtcgaattctacatggaacaagacagtgatggaaattgatggagatgga
gataaaaatggaaaatctgctggttctgctactattgatagagatatagtccaagctcct
ctggggttattcccccgaccttggccaccaaatgctgatgcttctgaaggtagccaattt
tttaaagtaattgaacatttccggctggttgggcgtgtcatggcaaaagctcttcaagat
ggacggcttttagacctgcctctctcaacggcattttataaacttgtgcttggtcaagag
cttgatttgcatgatattctgtcttttgatgccgaatttggcaaaattttgcaagaattg
catttacttgtttgtcgaaagcaatatctagattcattgggtggtgacaatagtgatgca
attgctgacttacggttccgtggagcctcaatagaagatctctgtttggatttcacgctt
ccaggatatccggactacatattgaagctaggggatgaaactgtggatatcaacaactta
gaggaatacatatctttggtggttgatgcaactgtgaagactggaattatgcatcaaata
gaggcatttagagctggtttcaatcaggtttttgatatctcgtcactgcaaatatttaca
ccccaagagttggactatttgctgtgtggtcgcagagagttgtgggaggctgagactctt
gctgatcatataaaattcgatcatggatatactgcgaagagccctccaattgttaatttg
cttgaaattatgggagaactaacaccagagcagcagcgggccttctgtcaatttgttact
ggtgcacccaggcttccacccggtggtctggcagtgctgaatccaaggctgacaattgtt
agaaagcattcttcgtctgcgactgctgctgctgctgccaatggaactggaccctcagaa
tcagcagatgaggacttgcctagtgtcatgacttgtgctaattacttgaagcttcctcca
tattctaccaaggaaattatgtataagaaattgctatatgcaatcaatgaagggcaagga
tcttttgatttgtcatga
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integrated database retrieval system
