Gossypium hirsutum (upland cotton): 107932572
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Entry
107932572 CDS
T04793
Name
(RefSeq) zinc finger CCCH domain-containing protein 40-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107932572
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ghi03041
]
107932572
Spliceosome [BR:
ghi03041
]
Complex B
Other components
Prp19-related factors
107932572
Complex C
107932572
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf-CCCH_RBM22
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH_12
RRM_occluded
RRM_3
zf-CCCH
zf-CCCH_3
zf-CCCH_PARP12
zf-CCCH_10
zf-CCCH_4
RRM_YTH1
Motif
Other DBs
NCBI-GeneID:
107932572
NCBI-ProteinID:
XP_040945534
UniProt:
A0ABM2ZSA6
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All DBs
Position
D03:3032119..3036237
Genome browser
AA seq
507 aa
AA seq
DB search
MAHRLLRDHEADGWERSDFPIICESCLGDNPYVRMTKADYDKGCKICTRPFTVFRWRPGR
DARYKKTEVCQTCSKLKNACQVCVLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE
EHDRRARAGLDYESSYGKVRPNDTILKLQRTTPYYKRNRAHICSFYVRGECTRGAECPYR
HEMPEAGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEAPEDESIKTLYVGGLDKRIT
EQDLRDNFYAHGEIESIKMVLDKACAFVTYTTREGAEKAAEELSSKLVIKGLRLKLMWGK
PQAPRPESETSDGSRQQAAVAHSGMLPRAVISQQQNQFQPSGPGMHDQPPPMQYFNIPPP
PQMDRAYYPSMDPQRMGALVPSQDGENKPGSDKQQAQHYPYQGMPPPPPGQYPHQHYPPY
GYMQPMPPYQQYPPYHSAMPPPRGPPQHYQHPGPPRPSPPVSAPASTSAQPPPASTSSGS
APPPPPPPPPPAAPVPSAAAASGSSQL
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atggcacaccgattgttaagagatcatgaggcggatggctgggaacgctctgattttcct
atcatttgcgagtcatgccttggtgacaatccatatgtccgaatgactaaagctgattat
gataaggggtgcaagatttgtacacggccatttacagtctttaggtggagacctggtcgt
gatgcaaggtataagaaaactgaggtttgtcagacttgcagtaagttgaaaaatgcttgt
caagtctgcgttttagatcttgaatatggattgccagttcaagttcgggatactgctcta
agtataaactccaatgatgccattccaaagagtgatgtcaatagagagtatttcgccgag
gagcatgacaggagggcgagagctggtctagattatgaatcctcatatgggaaggtacgt
ccaaacgacactattctgaagcttcagaggacaacaccttactacaagagaaaccgagca
catatttgcagtttctatgtgcggggtgaatgtacaagaggtgctgagtgcccttatagg
catgagatgccagaagctggggagttgtcccagcaaaatataaaagaccgttactatggg
gtgaatgatccagtggcactaaagctacttaacaaggctggtgaaatgccttctttggaa
gcgcctgaggatgaaagcattaaaaccctttatgtgggagggctggataaaaggatcacc
gagcaagatttaagggataacttttatgcccatggtgaaattgaatcgataaagatggtc
ctcgacaaggcatgcgcctttgttacatacacaaccagagaaggagctgaaaaggctgca
gaagagctttctagcaagctagtcataaagggtcttaggctgaagctaatgtggggtaag
ccccaagccccaaggcctgagtcagaaacctccgatggatccaggcagcaagcagcagtg
gctcatagcggaatgttgccccgggcagtaatatctcagcagcagaatcaattccagcca
tctggacctggcatgcacgaccaaccaccacctatgcagtactttaatatcccacctcca
cctcagatggatagagcctactatccatcaatggaccctcaaagaatgggtgctctggtt
ccgtctcaggacggggagaacaaacccggatcagataaacaacaagcacaacactatcct
taccaaggtatgccgccgccgccacctggacaatatcctcatcaacattatccgccatat
gggtacatgcaaccgatgccaccttatcaacagtatccaccataccattcagcaatgcct
ccacctcgaggcccacctcaacattatcaacaccctggacctccaagaccttcaccacct
gtgagtgcaccagcttcaacaagcgcacaaccaccaccagcatctacttcatcaggctct
gccccaccaccaccaccaccaccaccaccaccagcagcgcccgtcccatctgctgctgct
gcatctggatcttctcagctatga
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