KEGG   Gossypium hirsutum (upland cotton): 107932939
Entry
107932939         CDS       T04793                                 
Name
(RefSeq) DNA-directed RNA polymerases II and IV subunit 5A-like
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03020  RNA polymerase
ghi03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    107932939
  09124 Replication and repair
   03420 Nucleotide excision repair
    107932939
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ghi03021]
    107932939
   03400 DNA repair and recombination proteins [BR:ghi03400]
    107932939
Transcription machinery [BR:ghi03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     107932939
  RNA polymerase III system
   RNA polymerase III
     107932939
  RNA polymerase I system
   RNA polymerase I
     107932939
DNA repair and recombination proteins [BR:ghi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      107932939
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N DNA_pol3_alpha NA-iREase1 OB_RNR_1st
Other DBs
NCBI-GeneID: 107932939
NCBI-ProteinID: XP_016720551
UniProt: A0A1U8M167
LinkDB
Position
D07:complement(746700..749592)
AA seq 206 aa
MVLSDDEIRRLFRIRKTVLQLLKDRDYFVGDFEINMSREQFISKFGENMKREDLVINKAK
RNDSSDQIYVFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISSK
FHLEVFQETELLVNVKEHSLVPEHQVLTTEEKKTLLQRYTVKETQLPRIQVSDPIARYYG
LKRGQVVKIIRPSETAGRYITYRYVV
NT seq 621 nt   +upstreamnt  +downstreamnt
atggttctgtcagacgatgaaatcaggaggttgtttcgtatccgaaagacggtattgcag
ttgttgaaagacagagattacttcgtcggagatttcgagattaacatgtctagagaacaa
tttatttccaaattcggcgaaaacatgaaaagggaggatctggttattaataaagctaag
cgaaacgatagctctgatcagatctatgttttctttcctgaagaacccaaggttggtgtg
aaaacaatgaagacatataccaaccgcatgaaatcggagaatgtatttagggctatactg
gttgtgcaacaaaatttgactccctttgctcggacttgtatcaatgaaatttcttccaaa
ttccacttggaggttttccaggaaacggagctccttgtcaatgtaaaagaacattctctt
gttccggagcatcaggtgcttactaccgaggagaaaaagactttgctgcaaagatatact
gtaaaggaaacacagctgccgcgtatccaggtgagtgatccgatcgcaagatactacggg
ctgaagcgtggacaagtggtgaagataattaggcctagcgagactgctggtcgttatatt
acctatcggtatgtggtgtga

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