Gossypium hirsutum (upland cotton): 107933166
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Entry
107933166 CDS
T04793
Name
(RefSeq) LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 2
KO
K03128
transcription initiation factor TFIID subunit 2
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
107933166
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ghi01002
]
107933166
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
107933166
03036 Chromosome and associated proteins [BR:
ghi03036
]
107933166
Peptidases and inhibitors [BR:
ghi01002
]
Metallo peptidases
Family M1
107933166
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
107933166
Coactivators
SAGA/TFTC/STAGA complex
107933166
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
107933166
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_M1
HEAT_2
Peptidase_M1_N
Motif
Other DBs
NCBI-GeneID:
107933166
NCBI-ProteinID:
XP_040973988
LinkDB
All DBs
Position
A07:complement(5130345..5146829)
Genome browser
AA seq
829 aa
AA seq
DB search
MAKPRKPKPEDPKPAHSGAVVRHQKLCLSIDTNLRRIYGYTELEIEVPDIGIVGLHAENL
GIESVLVDGEPTDFEYYPRSQSSDIEKRWASAVSSPSSAADVAAAAYITALDTELIPNLL
INCCNKMQIEQMNTEPNGVQSSAEVNQNVKSVRVNYWVEKMETGIHFEDNVVHTDNQIRR
ARCWFPCIDDNNQRCCFDLEFTVAHNLVAVSNGSLLYQVLSKYDPPCKTYVYRLDVPVTA
QWISLAVGPFEILPDQHNGLISHMCLPPNLPKLRHTVEFFHNAFSEYEQYLDAKFPFGSY
NQVFLSPEMAISSSTVGASLCILTSQVLFDEKVIDQTIDTCIKLAFALSRQWFGVYITPE
APNDEWLLDGLAGFLTDLFIKKFLGNNEARYRRYKANCAVCKADDSGATALSSSFACKDL
YGTHSVGLLGKIRSWKSVAILQMLEKQMGPDFFKKILQAIICRAQSTTCPVRSLSTKEFR
HFANKIGNLERPFLKEFFPRWVGFYGCPVLRMGFSYNKRKNIIELAVLRECTATIDSSVS
VLNANPDSENRDGDIGWPGVMTVRVYELDGMSDHPDLPMAGDAWQLLEIACHSKLAARRY
QKPKKGSKPDGSDDNGDLPTVDMRSSVDSPLLWIRADPEMEYLAEIHFNQPVQMWINQLE
KDEDVVAQAQAITALESLPELSFSVLKALNNFLNDSKAFWRVRIEAALALASTSSEETDM
AGLQHLVKFYKSRRFDTDIGLPKPNDFSDFPEYFVLEAIPHAVATIRAADRKSPREAVEF
ILQLLKYNDNNENPYSXVFWLAALVQSVGELEFGHRFCSQVSFFVLPED
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcctcgcaaacccaagcccgaagacccgaagccagctcactccggcgccgtt
gtccgccaccagaagctttgcctctccatcgacacgaaccttcgtcgcatttacggctac
actgagcttgaaattgaggtgcctgatatcggcatcgttggattacatgcggagaattta
gggattgagagtgtgcttgtagatggggaaccgacagattttgagtattacccgcgtagt
cagagctccgatattgagaaacggtgggcctccgctgtgtcttcaccgagttcagccgcg
gatgttgctgcagctgcttacatcacggctcttgatacagaactgatccctaatttgctt
atcaattgttgcaataagatgcaaattgagcaaatgaatacggagcctaatggagtacaa
tcttctgctgaggtcaaccagaatgtgaaatctgttcgtgttaactattgggtagagaaa
atggagacagggattcattttgaggataatgtggtccatactgataatcagatacggcgt
gctcggtgctggtttccttgtattgatgacaataatcagcggtgctgttttgatctggag
ttcacggttgctcacaatctcgtagctgtcagcaatgggagcttattatatcaggtattg
agcaaatatgaccctccctgcaagacatatgtctacaggttagatgttcctgttactgct
cagtggatatccttagcagttggaccatttgaaatcctccctgatcagcataacggtctc
atttcacacatgtgtttaccacctaatttgccaaagctgcgtcacacggtggagtttttc
cataatgcattcagtgagtatgaacagtatcttgatgcaaaatttccatttgggtcatac
aaccaagtttttctatctcctgaaatggcaatatcttcctcaactgttggagcctccttg
tgcatccttacttctcaagttttatttgatgagaaggtcattgatcagacaatagacaca
tgcatcaaacttgcttttgctctttcaagacagtggtttggggtgtatattactcctgag
gcaccaaatgatgagtggctgctggatggtctagctggttttttgacagatttgtttatc
aagaaatttttaggaaataacgaggcacggtatcgaagatacaaggcaaattgtgctgtt
tgcaaagcagatgatagtggtgcaacagctttgagttcctcttttgcttgcaaggatttg
tatggaactcattccgttggcttgcttggaaaaatacgatcatggaagtcagtggcaatt
cttcagatgttagaaaagcagatgggacctgacttcttcaaaaagattctgcaagcaata
atttgtcgtgcacaaagtacaacctgtcctgtgaggtctcttagtacgaaagagttccgg
cattttgctaataaaattggaaacctggagcgtccatttctcaaagaattttttcctcgg
tgggtaggattttatggatgtccagttctcaggatggggttttcctacaacaagcggaaa
aatatcattgagttggcagttctgcgcgaatgcacagctacaatcgattcaagtgtatca
gttctgaatgctaatcctgattctgaaaatcgtgatggtgatattgggtggcctggagtt
atgactgtgagggtttatgaacttgatggtatgtctgatcatcctgatcttccaatggct
ggagatgcatggcagctgctggaaatagcatgccactcaaagcttgctgctagacgctac
cagaagcctaaaaagggttcaaaacctgatggctctgatgataatggtgatttgcctaca
gtagatatgcgttcgagtgtagactccccattgttgtggattagggcagatccagagatg
gaatatcttgctgaaattcattttaatcaacctgtacagatgtggattaatcagttagag
aaggatgaagatgtggtagctcaggcacaagcaatcactgcactagaatctttaccagag
ctttcattttctgttctcaaggcactgaataatttcctgaatgactccaaggccttctgg
agggttcgaatcgaggctgcacttgcattagctagcacatcttccgaggaaactgacatg
gctggtttgcaacatctggtgaaattttataaaagtagaaggtttgacacagatattgga
ctaccaaaaccaaatgacttctcagattttccggagtactttgttcttgaggccattcca
catgccgtagcaacgataagagctgcagacaggaaaagccccagagaagctgttgagttt
attttgcaacttttaaagtataatgataataatgagaatccttactctnatgtattctgg
ctcgctgcattggtacagtcagttggtgaacttgaatttgggcacaggttttgttctcaa
gtgtctttctttgtgttacctgaggattaa
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integrated database retrieval system
