Gossypium hirsutum (upland cotton): 107933309
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Entry
107933309 CDS
T04793
Name
(RefSeq) WD-40 repeat-containing protein MSI1
KO
K10752
histone-binding protein RBBP4
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03082
ATP-dependent chromatin remodeling
ghi03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
107933309
03083 Polycomb repressive complex
107933309
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ghi03036
]
107933309
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
107933309
Histone modification proteins
HAT complexes
HATB complex
107933309
HDAC complexes
Sin3A-HDAC complex
107933309
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
107933309
PRC2.2
107933309
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
107933309
Heterochromatin formation proteins
Other heterochromatin formation proteins
107933309
Chromatin remodeling factors
NuRD complex
107933309
NuRF complex
107933309
NuRF complex (fruit fly)
107933309
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1C_H4-bd
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_EML_2
WD40_WDHD1_1st
WDR55
WD40_RFWD3
Beta-prop_EML
Beta-prop_WDR75_1st
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_RIG_1st
eIF2A
WD_LRWD1
Beta-prop_HPS5
MIOS_WD40
NBCH_WD40
Beta-prop_SPT8
WD40_MABP1-WDR62_1st
Motif
Other DBs
NCBI-GeneID:
107933309
NCBI-ProteinID:
XP_016720974
UniProt:
A0A1U8M618
LinkDB
All DBs
Position
A13:1494270..1496801
Genome browser
AA seq
424 aa
AA seq
DB search
MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDRDEPAGKD
YSVQKMILGTHTSENEPNYLMLAQVQLPLQDSENDARQYDHDRSDLGGFGCASGKVQIIQ
QINHEGEVNRARYMPQNSFIIATKTVSAEVFVFDYSKHPSKPPLDGACSPDLRLRGHSTE
GYGLSWSKFKEGHLLSGSDDAQICLWDVNATPKNKALDAMQIFKVHEGVVEDVAWHLRHE
YLFGSVGDDQYLLIWDLRTPSVTKPIQSVVAHQSEVNCLAFNPFNEWVVATGSTDKTVKL
FDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE
DGPPELLFIHGGHTSKISDFSWNPCEDWVIASVAEDNILQIWQMAENIYHDEDDVPGDEF
AKGS
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atggggaaagacgaggaggagatgcgtggcgagatcgaggagcgactcatcaacgaagag
tacaaaatttggaaaaagaacactcctttcctctacgatctcgtcattacccatgccctt
gaatggccttctctcactgtcgaatggctccccgaccgtgacgaacctgctggcaaagat
tactccgttcaaaagatgatcttgggtactcacacctctgaaaacgaacccaattacctc
atgcttgctcaagtccagctccctctccaagattccgagaacgacgctcgtcaatatgac
cacgataggtctgacctcggtgggtttgggtgtgctagcggtaaggttcagattattcaa
cagatcaatcatgaaggggaagttaatagggctcgttatatgcctcagaattcttttatt
atagctactaagactgttagtgctgaggtttttgtgtttgattatagtaaacatccttcg
aaaccgcctttggatggggcttgtagtcctgatttgagacttaggggtcatagtactgaa
ggttatggtttgtcttggagtaagtttaaagaaggtcatttgcttagtggttctgatgat
gctcagatttgtttatgggatgttaatgctactcccaagaacaaagctcttgatgctatg
cagatctttaaggttcatgaaggtgttgttgaagatgttgcctggcatctcaggcatgaa
tacttgtttgggtctgttggggatgaccaatatttacttatttgggacttgagaacccct
tctgttaccaagcctatccaatctgtagttgctcaccagagtgaggtcaactgcttagct
ttcaatccctttaatgagtgggttgttgcaaccggttctaccgataagacagttaagtta
ttcgatcttcgcaagatcagtactgcactccacacctttgatagccacaaggaagaagtt
ttccaagtcgggtggaatccgaagaatgagactatcttagcatcctgttgtcttggcaga
aggctcatggtatgggatctcagcaggatcgatgaagaacaaacacccgaagatgccgaa
gatggtccacctgagttgctattcattcatgggggacacactagtaaaatatctgatttt
tcatggaatccatgtgaagattgggttatagctagtgtagctgaagataacatccttcaa
atatggcaaatggcggagaatatctaccacgacgaggacgatgtaccgggagatgaattt
gccaaaggttcttaa
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