Gossypium hirsutum (upland cotton): 107933622
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Entry
107933622 CDS
T04793
Name
(RefSeq) WD-40 repeat-containing protein MSI4
KO
K10752
histone-binding protein RBBP4
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03082
ATP-dependent chromatin remodeling
ghi03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
107933622
03083 Polycomb repressive complex
107933622
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ghi03036
]
107933622
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
107933622
Histone modification proteins
HAT complexes
HATB complex
107933622
HDAC complexes
Sin3A-HDAC complex
107933622
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
107933622
PRC2.2
107933622
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
107933622
Heterochromatin formation proteins
Other heterochromatin formation proteins
107933622
Chromatin remodeling factors
NuRD complex
107933622
NuRF complex
107933622
NuRF complex (fruit fly)
107933622
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
CAF1C_H4-bd
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_EIPR1
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
Beta-prop_EML
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_SPT8
Beta-prop_IFT122_1st
ANAPC4_WD40
WD40_RFWD3
Beta-prop_WDR19_1st
WDR90_beta-prop_4th
Beta-prop_NUP159_NUP214
Motif
Other DBs
NCBI-GeneID:
107933622
NCBI-ProteinID:
XP_016721368
UniProt:
A0A1U8M6S7
LinkDB
All DBs
Position
A06:126427271..126433994
Genome browser
AA seq
462 aa
AA seq
DB search
MKGEKGRSVEEKYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKTRQRLYLSE
QTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQ
NSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSRPDLILTGHQENAEFALAMCPTEPFV
LSGGKDKSVVLWSIQDHISTLAKEQGPTKSPGSTSTSTKHASKGGGGNDNHVGGPSVEAR
GIYQGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARAGSTPAIKVEKAHNADIHCVDW
NRHDVNLILTGSADNTIHMFDRRNLSSGSPVHKFVGHSAAVLCVQWSPDKSSVFGSSAED
GILNIWDHEKIGKRQDTTGLKAPNAPPGLFFQHAGHRDKVVDFHWNTSDPWTIVSVSDDC
ESTNGGGTLQIWRMIDLIYRPVDEVLAELDKFKPHILGCEQN
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgaagggggagaaagggagatcggtggaagagaaatacactcaatggaagtctttagtc
cctgtcctctacgattggctcgctaatcacaacctcgtttggccttctctctcttgccga
tgggggccgcaactagagcaagctacttacaagacccgtcagcgtctttacctttcagaa
cagactgatggaagtgttccaaacacacttgtaatagccaactgtgaggttgttaaacct
agggttgctgctgctgagcacatatctcagttcaatgaagaagcccgctctccctttgtg
aagaaatataaaactattattcatcctggagaggtgaacagaatcagagaactcccacag
aacagcaagatagttgcgacacatactgacagtcctgatgtcctcatttgggatgtagag
gcccagcctaatcgccatgctgtgctgggagctgcagattctcgtccagatctgatattg
actggacatcaagaaaatgctgaatttgctcttgctatgtgtccaactgaaccttttgtc
ctatctggaggcaaggacaagtcagtggttttgtggagcattcaagatcatatctctact
ctggcaaaggagcaagggcccacaaagtctccaggatctactagtaccagtacaaaacat
gcctctaagggtggtgggggtaatgataaccatgttgggggcccttccgtcgaggcacga
ggtatctaccaaggccatgaggatacagttgaagatgttcagttctgcccatcaagtgct
caggaattctgcagtgtcggagatgattcttgtcttatattatgggatgctagagctggc
tcaactccagctatcaaggttgagaaagctcataatgctgatattcattgcgtcgattgg
aatcgtcatgacgtaaatctcattttgactgggtctgctgataataccattcacatgttt
gaccgccgaaacctttcctctggctcaccagttcataaattcgtgggccacagtgctgct
gtcctttgtgtacagtggtccccagacaagtcatcagtctttggaagttctgctgaggat
gggatcttaaacatctgggaccatgaaaagattgggaaaaggcaagatactactggattg
aaggcaccaaatgctcctcctggattgttctttcaacatgcagggcatagggacaaggtt
gtggactttcattggaatacatctgatccctggacaattgtcagcgtgtcagatgattgc
gaaagcactaatggtggtggtactctacagatatggcggatgattgatttgatttaccgt
ccggtagatgaagtcttagccgagctagataagtttaaacctcacattctaggatgtgaa
caaaattag
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