Gossypium hirsutum (upland cotton): 107933728
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Entry
107933728 CDS
T04793
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03013
Nucleocytoplasmic transport
ghi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107933728
03015 mRNA surveillance pathway
107933728
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107933728
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
107933728
5.6.2.5 RNA 5'-3' helicase
107933728
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
107933728
mRNA cycle factors
Common to processing body (P body) and stress granule
107933728
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
UvrD-helicase
Helicase_RecD
NPHP3_N
nSTAND3
ATPase
PhoH
AAA_16
SRP54
AAA_22
AAA_32
Ribosomal_S13_N
AAA_25
AAA
Motif
Other DBs
NCBI-GeneID:
107933728
NCBI-ProteinID:
XP_016721495
UniProt:
A0A1U8M3W7
LinkDB
All DBs
Position
A03:922645..932464
Genome browser
AA seq
1262 aa
AA seq
DB search
MDSQFDTASQPDPATDAYTFLEFNTQGESDFEYADFRDPIRSWPTPSDATVADRSASDHH
SDTPASSSPSSVPKGAGRGATSNNNNSNSNSVSNSVAVVDSLATGISGLNFEETVGEEDG
GYEYGKGDFAEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKE
VCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLNVNALKDMNWDLS
QWCPLIDDRCFLQWLVKIPSEKEQLRARQISAQQINKVEELWKTNPDASLEDLEKPGVDD
EPQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTVRWDIGLNKKRIAYFVF
PKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVDVNHG
FSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNALPRRFGAPGL
PELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVD
QLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVQHLDTSEKSELHKLQQLKDEQGE
LSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPEC
LIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLILLGVKPIRLQVQYRMHP
CLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLN
RTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASV
DSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQALWN
GLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFFGGGPGIVPSDNFGSAASPS
PNADRRGSRARGAYMPPGPPNGTHKPGVHPSGFPMPRVPLPPFPGPQPYAIPARGAVHGP
VGAVPQVPQPGTRGFGAGRGNGGAPIGSHLPQQQGTQQNIGTIGSSFNFPLENPNSQPSV
GGPLSQPGFVNNVQGPSQAFRDGFSMGGMSQDFLGEDFKSQGSHVPYNIADFSTQASQSG
YAVDYLTQGAQSGFPGNFLNQNSQAGYSRFGSGNDFMSQDYMNHGSQGLFTQAGFNDPSH
DDASQSHFGVSNPNQLQSQGLMNSLYSQPFSHYNTQPLNLPAPQQQPQQDQGSQNQKFHY
NG
NT seq
3789 nt
NT seq
+upstream
nt +downstream
nt
atggattctcaattcgatacggcgtcgcaacctgaccctgccaccgatgcttataccttc
ctcgaattcaacacccaaggcgagtccgatttcgagtacgccgacttccgtgatccgatt
cgttcttggccgacgccttctgacgctactgtcgctgatcgttcagcctccgaccaccat
tccgacactcccgcgtcctcttctccttctagcgttccgaaaggcgctggccgtggcgcg
acgagcaataataataacagcaatagcaatagtgttagcaatagtgtggccgtggttgat
tcgttagcgacggggattagtggattgaattttgaggagacggttggggaagaggatggc
ggttatgagtatgggaaaggggatttcgcggaacacgcttgtcgatattgtggggtttct
aatccggcttgtgtggttcgttgtaatgttccttcatgtaggaaatggttttgtaattca
agagggaatacgtcgggatcgcatattgttaatcatcttgtacgagctaaacacaaggaa
gtttgcctccataaggatagtcctttgggagaaacaattcttgaatgctacaactgtgga
tgcagaaatgtcttccttcttggttttatatctgctaagacagagagtgttgttgttctt
ctttgtagagaaccttgtttgaatgtaaatgctttgaaagacatgaattgggacttgagt
cagtggtgcccccttattgatgataggtgctttctccagtggctggttaagatcccatct
gaaaaagaacagctacgggcgcggcaaataagtgctcaacaaataaacaaggtagaagag
ctttggaagacaaatcctgatgcctcccttgaagatcttgagaagcctggtgttgatgat
gaaccacagcctgtggccttgaagtatgaagatgcttatcagtatcaaaatgtttttgct
ccacttatcaagcttgaagctgattatgacaaaatgatgaaagaatctcaaagcaaggat
aatgttacagttcgatgggatattgggttaaacaagaagcgtattgcatattttgtcttt
ccaaaggaagacaatgagctgcgtctagtacctggtgatgagttgcgtctgcgttattca
ggagatgctgctcatcctgcatggcagtctgttgggcatgtgatcaagctaacggcacaa
gaagaggttgcgcttgagctccgtgctagtcagggagttcctgttgatgtgaaccatggg
ttcagtgttgattttgtgtggaagagtacaagttttgaccgaatgcaaggggcaatgaaa
acatttgcagttgatgaaactagtgttagtggatatatttaccatcacctgcttggtcac
gaggttgaggtgcagatggttcgcaatgcactgcctcgtcgttttggtgcccctggtctg
cctgaattgaatgcatcccaagtttttgctgtgaagagtgttcttcagaagcctataagc
ttgattcaaggtccccctggaactggaaaaactgttacttctgctgccattgtatatcac
atggctaaacagggtcaggggcaggttctggtctgcgctccaagtaatgttgctgttgat
cagctagctgaaaagataagtgccactgggttaaaggttgtaagactttgtgcaaaatca
agagaagctgtaagttctcctgttgaacatttgaccctgcattatcaggttcaacatctt
gacacatctgagaagagtgaacttcacaagttacaacaattgaaagatgaacaaggtgag
ttgtcaagcagtgatgagaaaaaatataaagcactgaagcgagcaactgagagggaaata
tctcaaagtgctgatgtcatttgttgcacttgtgttggggctggagatcctagattggct
aattttaggttccgccaggtacttattgatgaatctactcaggcgacggaacctgagtgt
ctcattcctttagttcttggtgcgaagcaggttgttcttgttggtgatcattgccaactt
ggtcctgttattatgtgcaagaaagctgcccgtgctggattagcacagtctttgtttgaa
cgtctaattttacttggtgttaagccaattagattgcaggttcaatatcgtatgcaccca
tgtttgtcagagtttccttctaacagcttctatgagggcaccttacaaaatggagtgaca
atcaatgaaaggcaatcttcgggcattgatttcccttggcctgtgcccaatcgtcccatg
tttttttatgtacagatggggcaagaggagattagtgctagtggaacatcatatctaaat
agaactgaggctgcaaatgttgaaaagattgttaccacattcttgaggagtggggttgtt
cctagtcagattggggtcataacaccttatgagggacaaagggcgtatattgtgaattat
atgtcaagaaatggtgctttgagacagcagctttacaaggaaatcgaggttgcaagtgtc
gattctttccaaggacgggaaaaagattacatcatcttgtcttgtgtgagaagtaatgag
catcagggtatcggatttctaaatgatcctcgcaggcttaatgttgccctaacacgtgct
cgatatggtatagtaattcttggaaatcctaaagttcttagcaaacaagctttgtggaac
ggtttattgacacattacaaggaacatgagtgcctggttgaaggacccctcaataacttg
aagcagagtatggttcaattccaaaagcccaaaaagatttacaatgaccggagacttttc
tttggaggtggacctgggattgtgcctagtgataattttgggtctgctgcctcaccgagt
ccaaatgctgatagaagaggcagtcgtgctcggggtgcttatatgcctcctggtccacct
aatggtactcacaagcctggagtgcacccttctgggttcccaatgcctcgggttccactt
ccaccttttcctggtcctcagccttacgctattcctgctcgtggagctgtacatggacca
gtgggagctgttcctcaggtacctcaacctggaactcgaggctttggggctgggcgtggt
aatggtggtgctcctatcggtagtcatcttccacagcagcaaggcacacagcaaaacatt
ggaactattggatcttctttcaacttccctctggagaatccaaatagccagccatccgtg
ggtggtccattatctcaacctggatttgttaacaatgtccaagggccgagtcaagctttc
cgtgatggattttcaatgggaggaatgtcccaggacttcttgggtgaagacttcaaaagc
caaggctcacatgtcccttataacattgctgatttttctacacaggcttctcagagtgga
tatgctgttgattaccttacacaaggagcacagagcgggtttccagggaacttcctaaac
cagaattctcaagctggatattctcgttttggttctggaaatgatttcatgtctcaggac
tacatgaatcatggatcacaaggcctgtttactcaggctggctttaatgacccttctcat
gatgatgcatctcaaagccactttggcgtgtctaatccaaaccagcttcagtcccagggc
ttgatgaattctctctactcccagcccttttcccactacaacacacagccactgaacttg
cctgctcctcaacagcagcctcagcaggaccagggctcccaaaaccagaaatttcactat
aacggttaa
DBGET
integrated database retrieval system
