Gossypium hirsutum (upland cotton): 107933858
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Entry
107933858 CDS
T04793
Name
(RefSeq) CCR4-NOT transcription complex subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107933858
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107933858
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107933858
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107933858
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
107933858
NCBI-ProteinID:
XP_016721641
UniProt:
A0A1U8M4A3
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Position
D11:59730868..59738682
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AA seq
888 aa
AA seq
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MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALVDARKQIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNVVGELESQIDSFEAEIEGLSVKKGKTKPPRLTHLETSITRHKA
HIMKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFDEFSDVDELYNSLALDKVDA
LEDLVAIGPLSKAAPILGLKPSLASSTSQGPQVSSSLEHAEDSASQDSNSDIARTPPSKS
SAITSATATPSGSHPIPAPLNLSPHSLSGASTPPIVLPGSSSARSVLENTGTTNPSSPVN
LPNATKEEDITSFPGRRPSPSLTDTGVRGIARGGLSGQPSSSIPLVSGSMASGNGALGAV
PSVSDMAKRTILGTDERPGNSSMVQSLVSPLSNRMMLPQTAKANDGSASVDSSNPSESAG
IPGRVFSPSMVSGMQWRPGSSFQNQNDPGQFRGRTEIAPDMREKYLQRLQQVQQQGHSNL
LGVPPLAGGNLKQFSAQQAPLMQQFNSQSSSLSLQSGLGLGGQAPGFNSVTAASLQQQQN
PMQQQSSQQALATSVPKDGDVGNAKVEEQQPHNLPDDSSSEAVPTSGLAKNLMNEDEMKT
QYAIDSTAAVSGSLTEPAQVIRDVDLFPGQPLQSNQSSSGLGVIGWRSVTDFGAIGDNLS
GSMNTGGMHDQLYNLQMLEASYYKIPQPKDSECARSYTPKHPAATPASYPQVQAPIVNNP
AFWERISLDGYGTGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPK
IATDEFEQGTYVYFDFHIANDDHQHGWCQRIKTEFTFEYNYLEDELIC
NT seq
2667 nt
NT seq
+upstream
nt +downstream
nt
atgggagcgagtcgcaagcttcaaggagaaatcgatcgtgttctgaagaaggtccaggaa
ggcgttgatgtcttcgatagcatctggaacaaggtttatgatactgataatgcgaatcag
aaggaaaagtttgaggcagacttgaagaaggaaatcaagaagctgcaaaggtacagggac
cagatcaagacatggattcagtccagtgagatcaaggataaaaaagttagtgcatcttat
gagcaggccctggtggatgctcggaaacaaattgagcgtgaaatggaaagatttaagata
tgtgaaaaagagactaagacaaaagcattctctaaagaaggcttgggtcaacagcctaaa
actgatccaaaggagaaggctaaatcagagacaagggattggttgaacaatgtggttgga
gagttggaatcccagattgatagttttgaagctgagattgaagggctttctgtgaagaaa
gggaagacgaaaccacctagactgacacacttggagacatcaattacccggcacaaagct
catataatgaagttagaattgattttgagattattggataatgatgaattgagtccagag
caggtcaatgatgtgaaagacttcttggacgattatgttgaacgtaatcaggaggacttt
gatgaatttagtgatgttgatgagctctacaactctttagctttagacaaggtggatgct
cttgaagatctggttgctattggtcctctttccaaggctgcaccgattcttggattgaag
ccatctttggcatcatcaacatctcaagggccgcaggttagttcctccctggagcatgca
gaagattcagcttcccaggatagtaattctgatatagcaaggactccaccttcgaaaagt
agcgcaattacttctgctacagcaacaccgagtggaagccatccaatccctgctccactg
aatctttcacctcatagtttgtctggtgcttcaacgcctccaattgttcttccaggttca
agttctgctcgaagtgttttggaaaacacaggcaccaccaatccgtcatctcctgtaaat
ttgccaaatgctacaaaagaagaagatatcacaagcttccctggccgtaggccttctcca
tctcttactgatactggagtacgaggcattgctagaggaggcctctcaggtcagccttca
tctagtattccccttgtttctggaagtatggcttctggcaatggagcccttggtgcggtc
ccttcagtctctgacatggcaaaaagaactattttggggactgatgaaagacctggaaac
agtagcatggtgcaatctttggtatcccctctcagtaacagaatgatgttgcctcagaca
gccaaggctaatgatggaagtgcatctgttgattctagtaatcctagtgaatctgctgga
atacccggcagagttttttccccttcaatggtttctggtatgcagtggaggcctggaagc
tcctttcagaatcaaaatgacccggggcagtttcgtggaagaactgagatagcacctgat
atgagggaaaaatatttgcaacggctccaacaagtgcagcaacaaggccatagcaacctg
cttggtgtgcctcctctcgccggaggaaatcttaagcagttttctgcacaacaagcccca
ctcatgcagcagttcaattctcaaagctcttcactctctctccaatcgggtctaggactt
ggtggccaagcacctggttttaatagtgtaacagctgccagtttacagcagcaacaaaat
cccatgcaacaacagtctagtcagcaggcattggcaacaagtgttccaaaggatggggat
gttgggaatgcaaaagttgaggaacaacaaccgcacaatttacctgatgattcaagttct
gaagctgttccaacttctgggcttgccaagaatcttatgaacgaggatgagatgaaaact
cagtatgcgattgattctacggctgctgtatcaggctccttgacagaacctgctcaagtt
attagggatgttgatctttttcctgggcaacccttacaatctaaccagtcttctagtgga
cttggcgttattggctggagaagtgttactgattttggtgccattggtgacaacctcagt
ggctcaatgaatactggaggaatgcatgatcaactatacaatttgcagatgcttgaggct
tcatactataaaattccccaacctaaagactcagaatgtgctaggagctacactccaaaa
caccctgctgcaacacctgctagctaccctcaagttcaggcaccgattgtgaataatcct
gccttctgggaacgcataagcttagatggctacggcactggcactgatacactgttcttt
gcattttattatcagcagaatacttaccaacaatatctggccgcaaaggaactgaagaag
cagtcttggagataccacagaaaatacaacacatggtttcagcggcatgaggaaccaaaa
atcgccactgatgaatttgaacagggaacctatgtatactttgattttcacatagcaaat
gatgaccaccaacatggatggtgtcagagaattaagacggagttcacatttgagtataac
tatcttgaagatgaacttatttgctga
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