KEGG   Gossypium hirsutum (upland cotton): 107933861
Entry
107933861         CDS       T04793                                 
Name
(RefSeq) WD repeat-containing protein 48 isoform X1
  KO
K15361  WD repeat-containing protein 48
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03460 Fanconi anemia pathway
    107933861
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ghi03400]
    107933861
DNA repair and recombination proteins [BR:ghi03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   FA (Fanconi anemia) pathway
    Other FA pathway factors
     107933861
SSDB
Motif
Pfam: WD40 WD40_Prp19 DUF3337 WD40_CDC20-Fz WD40_WDHD1_1st WDR55 Beta-prop_TEP1_2nd EIF3I Beta-prop_EML Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 Beta-prop_WDR75_1st Beta-prop_SPT8 NBCH_WD40 Beta-prop_TEP1_C WD40_MABP1-WDR62_2nd Beta-prop_SCAP Beta-prop_WDR90_POC16_2nd Beta-prop_IFT122_1st Beta-prop_WDR75_2nd Beta-prop_DCAF4 WD40_RFWD3 RAWUL Beta-prop_RIG_2nd Beta-prop_EIPR1 WD40_MABP1-WDR62_1st Beta-prop_DCAF12 Beta-prop_IP5PC_F
Other DBs
NCBI-GeneID: 107933861
NCBI-ProteinID: XP_016721650
UniProt: A0A1U8M4C5
LinkDB
Position
D11:59639063..59648770
AA seq 763 aa
MHRVGSAGNNTNSNRPRKEKRLTYVLNDTADTKHCAGINCLAVLKSSASDGCDYLFTGSR
DGTLKRWALGENAATCSATFESHVDWVNDTVIAGDSTLVSCSSDTTLKTWNCLSEGTCTR
TFRQHSDYVTCLAAAEKNTNVVASGGLGGEVFVWDIEAAVTPVSKSSDVVEDDCSNSMNG
SANLLPISSPRTISSSNSIRTHTTQCHGYVPIAVKGHKESVYALAMNGSGSLLVSGGTEK
VVRVWDPRTGSKNMKLRGHADNIRALLLDSTGRYCLSGSSDSMIRLWDLGQQRCVHSYAV
HTDSVWALASTPTFSHVYSGGRDLSLYLTDLTTRESLLLCTKEQPILQLALHDDSIWVAT
TDSSVCRWLAEGRTPQNVFQRGGSFLAGNLSFSRARVSLEGSTPAPVYKEPIFTIPGTPA
IVQHEILNNRRHVLTKDAAGSVKLWEITRGVVIEDYGQVSFDKKKEQLFEMVSIPAWFTA
DTRLGCLSVHLDTPQCFTAEMYSVDLNITGKPEDDKVNLARETLKGLLVHWLAKRRQRHG
TQASANGDVVSGKDMTARSSAHSRIEVDGNAENDSLVYPPFEFSTVSPPSIITEGSQGGP
WRKKITELDATEDEKDFPSWVLDCVLNNRLPPREKTKCSFYLHPCEGSAVQILTQGKLSA
PRILRMHKVVNYVIEKLVLDKPIDSLNTDGTYAAGLGGQPQHSAGGEGSLRSGLKPWQKL
RPSIEILCNNQVLSPEMSLATVRAYIWKRPEDLVLNYRMIQGK
NT seq 2292 nt   +upstreamnt  +downstreamnt
atgcaccgagtgggcagtgcagggaacaataccaattctaaccgcccacggaaagagaaa
aggttgacatatgtactgaatgataccgccgacacaaagcattgtgcaggcataaattgt
ttggctgtgctaaagtcatcagcctcagatgggtgcgactatcttttcactggtagccgt
gatggcacacttaagagatgggcacttggtgaaaatgctgccacatgctctgctacattt
gagtctcatgttgattgggtaaatgatactgttattgctggtgatagtacacttgtttca
tgctcatcagacactacattgaagacgtggaattgcttgtctgaaggaacttgcaccagg
actttccgtcaacactctgactatgttacatgtctagccgcagctgaaaaaaataccaat
gtggttgcctctgggggtcttggaggggaggtttttgtgtgggatattgaagctgcagta
actccagtctctaaatccagtgatgtagtggaagatgattgttccaacagtatgaatggt
tcggcaaatttattaccgatatcaagtccgagaacaattagctcaagtaacagcattagg
acgcacacaactcagtgtcatggatatgtccccattgctgttaaaggtcacaaagaatcg
gtctatgcattggcaatgaatggtagtggctcccttcttgtctctggtggaactgagaag
gttgttcgagtttgggatccaagaactggttcaaagaatatgaaactaagagggcatgca
gataacattagggctttgcttctggattctactggcagatattgtttgtcagggtcctcg
gattctatgatcaggctgtgggaccttggtcaacaacgttgtgtgcattcatatgctgtg
cacacagattctgtttgggcacttgcaagcaccccaacatttagtcatgtttatagtggt
ggtagagatctttctttatatctgacagacttgacaacaagagagagtcttttgctttgc
accaaggaacaaccaattttgcagttggcattgcatgatgatagtatatgggttgcaact
acagattcttcagtttgtaggtggcttgctgagggacggactcctcagaatgtcttccaa
agaggtggttcatttttggctggaaacttgtctttttcgagggcaagagtttcattagaa
gggtctaccccagcccctgtttataaagaaccaatctttaccattcctggaactccagca
attgttcagcatgaaattttaaataacagaaggcatgtattaacaaaggatgctgctggt
tcagtaaagctctgggagataaccaggggtgttgtgattgaggattatggacaggtttca
tttgacaagaaaaaggaacagctttttgagatggtaagcattcctgcatggttcactgcg
gatacccggcttggatgcttgtctgttcatttagacacgccccagtgctttactgcagag
atgtattctgtagatctgaacataactggcaagcctgaggatgataaggttaatctagct
cgtgaaacccttaaaggtcttttggttcattggttggccaaaagaaggcaaagacatggc
acccaggcttctgctaatggagatgttgtatcaggaaaagatatgactgccagaagttct
gctcattcaaggattgaggtagatggaaatgctgaaaatgactcattggtctatcctcct
ttcgagttttctactgtttccccaccctcaattattaccgagggttcccaaggaggtcct
tggagaaagaagattactgaattggatgcaaccgaggatgagaaggacttcccttcgtgg
gttttggattgtgtattaaataatcggctaccacctagagaaaaaaccaagtgcagcttc
tatcttcatccatgtgaaggttcagctgttcagatactgacacaaggaaagttaagtgct
cctcgcatattgagaatgcataaggttgttaattatgtcatagaaaagctggtgcttgac
aaaccaattgatagtttaaatactgatgggacatatgctgctggacttggaggacaaccg
caacattcagcaggtggagagggatctcttcggtctggattgaagccttggcaaaagctt
cggccttctattgagattttatgcaataatcaggtactgtctccggagatgagcttagcc
actgtgcgggcttacatatggaagagacctgaggatttggtacttaattatagaatgatt
caaggcaagtga

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