Gossypium hirsutum (upland cotton): 107933993
Help
Entry
107933993 CDS
T04793
Name
(RefSeq) polygalacturonase-like
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi00040
Pentose and glucuronate interconversions
ghi01100
Metabolic pathways
Module
ghi_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
107933993
Enzymes [BR:
ghi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
107933993
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Motif
Other DBs
NCBI-GeneID:
107933993
NCBI-ProteinID:
XP_016721805
UniProt:
A0A1U8M4V6
LinkDB
All DBs
Position
A07:14629972..14631759
Genome browser
AA seq
420 aa
AA seq
DB search
MALQFNFISSMLIILLLTISSAKAQEAGGVGGRGGGDGGVIDVVAKFGAKADEKTDLSKP
LLDAWKEACASTSPAKIVIPKGTYFLSTATFDGPCKAPIELQVEGIVKAPADPGAFKEPK
WIAFNRIENFKLSGGGVFDGQGTIAYKREGCDKHNFCGSLPINLRFDFLTNAMIQGVTTK
DSKQFHVNVLGCKNITFEHFTVSAPGESPNTDGIHIGRSDGVNVLNTEIKTGDDCVSIGD
GSKNLVINGVTCGPGHGISIGSLGLFKNEEPVDGVTVKNCTLTNTSNGVRIKSWPGAEPG
TCSNIHFEDITVTNVSSPIIIDQKYCPWNKCKINEESKVKLSNISFKNIHGTSALPEAVK
IICSATLPCENVELIDIEIMHSGPTGPAVSQCSNVKPKVSGKQNPTACSAPVLANPTSTS
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atggctcttcaatttaattttatttcatccatgttaataatattacttttaaccatatca
tccgctaaagctcaagaagctggtggtgttggcggtagaggaggaggagatggtggcgtt
attgatgttgttgcaaagtttggtgcaaaggcagacgagaaaacagatttgagtaagcca
ttgttggatgcttggaaagaagcatgtgcctcgacatctccggcaaaaattgtgattcct
aaagggacatattttttaagtacagctacctttgatggtccttgcaaggctcctattgag
cttcaagttgaaggcattgtgaaggctccagcagaccctggtgctttcaaggagcctaaa
tggattgccttcaatagaattgaaaatttcaaattgtctggcggaggagttttcgatggc
caaggaaccattgcttataaaagggaaggttgcgacaagcataatttttgtggttcactt
cctattaacctaaggtttgattttttaaccaacgcaatgatacaaggtgtaactaccaaa
gacagcaagcaattccacgttaatgttctaggatgcaaaaacattacttttgaacatttc
acagtatcggcacctggagaaagcccaaacacagatgggattcacatcgggagatcagat
ggggtcaatgttcttaacacggagataaaaactggtgatgattgtgtttcaattggagat
ggttccaaaaatttggttatcaatggagtaacttgtggaccaggacatggtatcagtatt
ggcagtctgggattgtttaaaaatgaagaacccgttgatggagttactgtaaaaaattgc
accttgactaatacttcaaatggtgttagaatcaaaagttggccaggtgctgaacccggt
acttgttcgaacattcactttgaggatattaccgtgaccaatgtcagttctcctattata
attgatcagaaatattgcccatggaacaaatgcaaaataaatgaagaatcaaaagttaaa
ctaagcaacattagtttcaaaaacattcatggcacttctgcgcttccagaagctgtcaag
attatttgcagtgctactttgccgtgtgaaaatgtggaactcatcgacattgaaattatg
cacagtggaccgactggacctgcagtatcacaatgttcaaatgtgaagcctaaagttagt
ggcaaacaaaatccaactgcatgttccgcccctgtcctagcaaaccctacctccacctct
taa
DBGET
integrated database retrieval system
