Gossypium hirsutum (upland cotton): 107935045
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Entry
107935045 CDS
T04793
Name
(RefSeq) putative tRNA pseudouridine synthase
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ghi03016
]
107935045
Enzymes [BR:
ghi01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
107935045
Transfer RNA biogenesis [BR:
ghi03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
107935045
Prokaryotic type
107935045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
Motif
Other DBs
NCBI-GeneID:
107935045
NCBI-ProteinID:
XP_016723072
UniProt:
A0A1U8M8C4
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Position
A03:4787053..4790411
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AA seq
509 aa
AA seq
DB search
MAISCLRLSLAPWLVKTPRPRPPLKVKPFRIICTAQSSVVDEKELPLPLSACKWEPFRKK
KVVMRVGYVGTDYRGLQLQRDEHELSTIENELETAIFKAGGIRDSNYGDLHKIAWARSSR
TDKGVHSLATMISLKMEIPEDAWKEDPSGIALANCVNSYLPDNIRVFSILPSQKSFDPRR
ECNLRKYSYLLPAEIIGIKSHFTEAETNCHISDFNSILNCFEGEHPFHNYTQRAKYRSRV
PPRQTARNGRPPRAKSHNGSSTSEIEESDVEEDTRIDETSTVNNEEMSCGFGEPVVDSCN
GQGNGSKDQSPKVVIARWLHEPDETDRITSSHFRKIFRCSCGKLQNSMGFDYVEISIWGE
SFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKFSRVVLPLAPSEVLILRGNTFILRKAP
GNVTRPEMLVMVESEEILKAVDEFYKSVMLPQVSKFLDPSKSPWEEWVENLDFNTGIPDA
ELDEVRNAWKLWKEKLPIRRTSSAPAVSL
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atggccatttcttgtctgagactatccttggctccatggctggtgaaaactccaaggcca
agacctcctttgaaagtaaaaccttttcgaatcatttgcactgctcagtcctctgtagta
gacgaaaaggagctgcctctccctctctccgcctgcaaatgggaaccttttcgcaagaaa
aaggttgtcatgcgggtcggctacgttggcaccgactacagaggtcttcaactgcagcga
gatgaacacgagctatctactattgaaaatgaactggaaactgccattttcaaggctggg
ggaatccgtgacagtaattatggtgatctgcacaaaattgcctgggccagaagcagccga
acagataaaggagttcactctttggcaacaatgatctccttaaaaatggagatacctgaa
gatgcttggaaagaagaccccagtggcattgccctggctaattgtgttaactcttatctt
cccgacaatatccgagtcttcagtatattaccttcacaaaagagtttcgatcctagaagg
gaatgtaatctccggaaatattcctaccttctaccagctgaaatcattggaataaaaagt
cacttcactgaagctgaaactaattgtcatatatcagacttcaacagtatattaaactgt
tttgagggtgaacaccctttccataattacactcaaagagccaagtacagaagtcgagtt
cctcctaggcaaactgccagaaatggtcgtccaccaagagctaaatctcataatggctca
tcaacttccgagatagaggaaagtgatgtagaggaagatacaaggattgatgaaactagt
acagtaaataatgaggaaatgtcttgtggttttggtgaaccagtggttgactcttgtaac
ggtcagggcaatggctcgaaggatcaaagtcctaaggtagttatagcaagatggttacat
gaacctgacgagacagatagaataacatcttcccactttcgaaaaatttttcgctgttct
tgcggaaagctgcagaattcaatgggatttgattatgttgaaatttccatatggggagag
tctttcatgttacatcagatccgcaaaatggttggaactgccgtagctgtgaagcgcaaa
ttgctcccaagagatattctaacattatcgctagccaaattctcacgggttgtccttccc
cttgctccatctgaagttctaattttgaggggaaacacattcatattgagaaaggcgcct
ggtaatgtaacaagacctgaaatgctggtgatggttgaatcagaagaaatcctcaaggca
gttgatgagttctacaaatctgtaatgttgccgcaagtttcaaaatttttggacccttcc
aaatcaccctgggaagaatgggttgaaaatttagattttaacacaggcattcccgatgca
gagttggatgaagtcaggaatgcttggaagctgtggaaggagaagttgccgattaggcga
acttcttctgcacctgcagtgagcctataa
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