Gossypium hirsutum (upland cotton): 107935346 Help Entry 107935346         CDS       T04793                                  Name (RefSeq) E3 ubiquitin-protein ligase COP1   KO K10143   E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27] Organism ghi  Gossypium hirsutum (upland cotton) Pathway ghi04120   Ubiquitin mediated proteolysis ghi04712   Circadian rhythm - plant Brite KEGG Orthology (KO) [BR:ghi00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     107935346  09150 Organismal Systems   09159 Environmental adaptation    04712 Circadian rhythm - plant     107935346  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04121 Ubiquitin system [BR:ghi04121]     107935346 Enzymes [BR:ghi01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.27  RING-type E3 ubiquitin transferase      107935346 Ubiquitin system [BR:ghi04121]  Ubiquitin ligases (E3)   Single Ring-finger type E3    Other single Ring-finger type E3     107935346   Multi subunit type E3    Cul4 complex     Target recognizing subunit (DCAF)      107935346 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  WD40 WD40_CDC20-Fz WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_RIG_2nd WDR55 Beta-prop_EIPR1 zf-C3HC4_2 Beta-prop_WDR19_1st Beta-prop_DCAF4 EIF3I Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd WD40_MABP1-WDR62_1st zf-C3HC4 Beta-prop_TEP1_C Beta-prop_HPS5 Beta-prop_EML Beta-prop_CAF1B_HIR1 WD40_like zf-C3HC4_3 zf-RING_2 Beta-prop_WDR75_1st zf-C3HC4_4 zf-RING_UBOX Beta-prop_DCAF12 Beta-prop_SCAP WDR90_beta-prop_4th zf-RING_5 WD40_RFWD3 Beta-prop_WDR35_TULP_N Beta-prop_IFT122_1st U-box RING_XB3-XBAT31 zf-RING_10 zf-rbx1 Beta-prop_IFT122_2nd Rad50_zn_hook zf-Nse Motif Other DBs NCBI-GeneID:  107935346 NCBI-ProteinID:  XP_016723411 UniProt:  A0A1U8M996 LinkDB All DBs Position D10:839979..845932 Genome browser AA seq 677 aa AA seqDB search MGGTLVPTATKSEPPSPPPPMESTAPSIPPPPPPPMPPSLMEEEPSEADIDKDVLCPICM QIIKDAFMTACGHSFCYMCILTHLRNKSDCPCCSRYLTNNHIFPNLLLNKLLKKISARQS ARNASPVENLRQTILQGCEVSAKELDSLLSLLVDKKMKMEQSEAETNMQILLDFLNCLRK KKLEELTQIQNDLQYIKEDTTAVKKRTMELYTAKERCSMNLRMLVDDFSAEKPLPSLIDQ YNNGAITGGRNSQGWIGSARSQSRVSYQANSPGFRSKDANGGSDSTCNTDSGLTVARKRR IHAQFNDLQECYLQKRQHWTKQFNKQEDEGPAAMDVDGYNPGLQDFQAVLTTFTRYSRLR VIAELRHGDIFHSANIVSSIEFDRDDEMFAIAGVSRRIKVFEFSAIVNEPADVHCPIVEM STRSKLSCLSWNKYTKNHIASCDYDGIVTVWDITTRQSLMEYEEHEKRAWSVDFSRTEPS MLVSGSDDCKVKVWCTKQEASVLNIDMKANICSVKYNPGSSVHVAVGSADHRVHYYDLRN ISKPLYVFGGHKKAVSYVKFLSNHELASASTDSTLRLWDVKENLPLRTFKGHKNEKNFVG LTVNSEFIACGSETNEVFAYHKAISKPAASYKFGSDMAGVDEEAGSYFISAVCWKSDSPT LLVANSQGTIKVLVLAA NT seq 2034 nt NT seq  +upstreamnt  +downstreamnt atgggcgggacacttgttcccaccgcaactaaatccgagccgccatcaccaccgccgccg atggaaagcaccgcgccttctattcctcctcctcctcctcctccgatgccgccgtcattg atggaggaagagccttctgaagctgacattgataaggatgtgctatgtccgatatgcatg cagattatcaaagacgcttttatgacggcttgtggtcatagcttttgttatatgtgtatt ttgactcatcttcgaaataagagcgattgtccttgttgttctcgttatctcactaataat catatcttccctaatttattgcttaataagttattgaagaaaatctctgctcgtcaatca gcaaggaatgcctctccggtagaaaatcttcgtcaaacaatactgcagggttgtgaggtg tcagccaaggagctggatagtttgttgtctctacttgttgacaagaagatgaaaatggag caaagtgaagcagagacaaacatgcagattctgcttgatttcttgaactgtctaaggaag aaaaagcttgaagagcttactcagattcaaaatgatcttcaatatattaaggaggacaca actgctgtaaagaaacgtaccatggaattgtatacggcgaaagagagatgctccatgaat ctaaggatgcttgttgatgatttctctgcagaaaaacccttgccttcattgattgatcaa tataataatggcgcaataactggtggtcgcaactcacaaggctggataggttcagcaagg tcacagagcagggttagttaccaagcaaattcaccgggattcagaagtaaagatgccaat ggtgggtcagattctacatgcaatactgattcaggattgactgtggcaagaaagaggcgg attcatgcacagtttaatgacctacaagagtgttacttgcaaaagcggcagcattggacc aaacaatttaataaacaggaagatgaaggtccagcagcaatggatgtagatggttataat cctggtcttcaggattttcaggcagtgctaactacatttacacgatacagtcgattgagg gtcattgctgaacttaggcatggtgatattttccactctgctaacattgtctcaagtata gaatttgatcgtgatgatgagatgtttgctattgctggagtgtcaaggcgcatcaaggtt tttgagttttctgcgattgtgaatgaaccagcagatgtgcattgtcctattgttgaaatg tctaccagatctaagcttagttgcttgagttggaataagtacacaaaaaaccatattgct agctgtgattatgatgggatagtaactgtctgggacattactactcggcagagtttgatg gaatatgaggaacatgaaaagcgagcttggagtgttgatttttcacgcaccgaaccttca atgcttgtctctggcagtgatgactgcaaggtcaaagtttggtgcacaaagcaagaagcc agtgttctcaacatcgacatgaaagcaaacatttgttctgtcaagtacaatcctggatcc agtgttcatgtagcggttggttctgctgatcaccgtgttcactattatgacttgagaaac atcagcaaaccgctttatgtgtttggtgggcataagaaagctgtttcatatgtgaaattt ttgtctaaccatgaattggcttctgcttcaactgacagcacactgcgcttatgggatgta aaagaaaatttaccactgcgcactttcaagggtcacaaaaatgagaagaatttcgttggc ctcacagtaaacagtgagttcattgcttgtggcagtgaaacaaatgaagtatttgcatat cacaaggctatatctaaacctgcagcttcgtataaatttggttccgacatggctggtgtc gatgaggaagccggatcttacttcatcagtgctgtatgttggaagagcgatagcccgaca ctactcgtggcaaacagtcagggaacaataaaagtgctcgtgcttgcggcttaa

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