KEGG   Gossypium hirsutum (upland cotton): 107935540
Entry
107935540         CDS       T04793                                 
Name
(RefSeq) putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1
  KO
K15711  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
Organism
ghi  Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ghi04121]
    107935540
   03400 DNA repair and recombination proteins [BR:ghi03400]
    107935540
Enzymes [BR:ghi01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     107935540
Ubiquitin system [BR:ghi04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    107935540
DNA repair and recombination proteins [BR:ghi03400]
 Eukaryotic type
  TLS (translesion DNA synthesis) factors
   Rad6 epistasis group
    107935540
SSDB
Motif
Pfam: SNF2-rel_dom HIRAN Helicase_C zf-C3HC4 zf-C3HC4_3 zf-C3HC4_2 ResIII zf-RING_2 DEAD zf-RING_5 zf-RING_UBOX zf-rbx1 zf-ANAPC11 U-box AAA_34 SWI2_SNF2 Prok-RING_4 RING_XB3-XBAT31 DUF1644 Rad50_zn_hook TRAF3_RING zf-C3HC4_4 zf-Nse zf-RING_4
Other DBs
NCBI-GeneID: 107935540
NCBI-ProteinID: XP_040965743
LinkDB
Position
D13:complement(104059..108695)
AA seq 863 aa
MEELASSVDELWEDQESSSQSSFDTYLLGFVIANIVGLQYYRGKISGREMVGLVREPLNP
YDGNALKVLNTRTLQVGHIERSVAAVLSPLIDSHLIVVEGIVPNSRSASNRYKIPCQIHI
FARLEAFNSVKSAISRGGLELISHSDVSFTLSEAAVVKGNRAGGESQSLDKVFKLVEKNV
SKKAAMEPIEPPNEVIISQLLLHQKEGLGWLLHKENSNELPLFWEEKGGEFVNVLTNYQT
DKRPEPLRGGIFADDMGLGKTLTLLSLIAFDKFGSFVPNSGDAGIEEIVEEDVKKGKRGR
GASKKGTRPRKKRNTKEAEFGSKAKGKSVSVADGCVSFSGRRTTLVVCPPSVFSSWITQL
EEHTSPGKLKVYMYYGGERTKEVEELKKYDIILTTYSTLATEESWFDSPMKKIEWWRVIL
DEAHVIKNANAQQSKAVTNLKATCRWAVTGTPIQNGSSDLFSLMAFLRFEPFSIKSYWRS
LVQRPLAQGNKNGLSRLQVLMASISLRRIKGNNLVGLPPKTLQTCYVELSVEEREIYDQI
EGKAKNVIEEFIANDSLVRNYSTVLGMLLRLRQICTSLALLPLDLRALFPSSNVEDVSNN
PELLKKMVVMLQDGEDFDCPICISLPVDVVITRCAHIFCRSCILKTLQRTKPCCPLCRQP
LSQSDLFSAPPKSSEADHTEISSRNPTSSKVSALLSLLRESRDQKPATKSVVFSQFRTML
LLLEKPLTNAGFKILRLDGSMNAKKRAQVIEEFQVPGLDGPTVLLASLKASGAGINLTAA
SRVYLIEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIARNSIEERVLELQERKKKLATEA
FGRKGPKHRKEVTIDDLRTLMSL
NT seq 2592 nt   +upstreamnt  +downstreamnt
atggaagaattggcgtcgtccgttgatgaattatgggaggatcaagaatcctcttcccag
tcctccttcgatacttatttgcttggctttgtcatcgccaatatagtaggccttcagtat
tacagaggcaaaatcagtggccgagaaatggtgggacttgtgcgagaacctctcaaccct
tacgacggaaacgccctcaaagttctcaacactagaacccttcaagtgggccatatcgag
cgttccgtagccgccgtactttcgcctttgattgactctcacttgattgtcgtcgaaggt
atcgtgcctaattctcgtagtgctagtaataggtataaaatcccctgccaaattcacatt
tttgctagattagaagcctttaattctgttaaatccgcgatttcacgaggtgggttggag
ttaatttcccactctgatgtgtctttcacgttgtctgaggctgctgtggttaagggaaac
agagctggaggagagtcccagagtttggataaggttttcaagttggtcgaaaagaatgtt
agcaagaaggcagcaatggaacccatagagcctccaaatgaggttattatatctcagctt
ttgttgcaccaaaaggaaggtttaggatggttactccataaagaaaattcgaatgagttg
cctcttttttgggaggagaaaggtggagaatttgtaaacgtgttgacaaattatcagact
gataaacgtcctgagcctttgcgaggagggatttttgctgatgatatgggattaggtaag
actctaactttgctttctttgattgcgtttgataaatttggtagctttgttcccaattct
ggtgatgctggtatagaagagattgttgaggaggatgttaagaagggaaagaggggtaga
ggagctagtaagaaaggtactagacctcgaaaaaaacgtaatactaaggaagctgaattt
ggcagtaaagctaaggggaaatctgtcagtgtagctgatgggtgtgtcagtttttctggc
cgaagaacgacattagttgtgtgccccccctctgtgttttcatcatggataacacagctt
gaggaacacactagtccggggaaattgaaggtgtatatgtattatggaggagaaagaact
aaggaagttgaggagcttaagaagtatgatattattttgactacttatagtactctggcc
actgaagaatcttggtttgactcccctatgaagaagatagagtggtggcgagtcatctta
gatgaggcacatgtgattaagaatgcaaatgcccaacagagtaaagctgtcactaatttg
aaggccacttgtagatgggccgttacaggaactcccatccaaaatggctcatctgatttg
ttttctttgatggcatttttgcgattcgaaccgttttctatcaagagctattggagaagt
ttggttcaacgaccccttgctcagggtaataagaatggtctctcacgtctccaggttctg
atggccagcatctccttgcggagaataaagggtaataacttagttggattgccacctaaa
acattacaaacatgttatgttgagctttctgtagaagagcgtgaaatttatgaccagatt
gaaggaaaagccaaaaatgttatcgaggagttcattgcaaatgacagtctagtgcgcaac
tattcaaccgtgcttggcatgcttttacgacttcggcagatttgtactagtcttgccctg
ttacctctggatctccgagcgttgtttccatctagcaatgttgaagatgtatccaacaac
ccagagttgctaaaaaagatggttgtgatgctacaagatggcgaggatttcgactgtcct
atttgcatctctcttcctgttgatgtagtaattacacgttgtgcccatatcttttgccga
tcctgcatccttaaaaccctacagcgtacgaagccatgctgccctttgtgtcgtcaaccc
ttatctcagtctgatctcttttcagcccctccaaaatcttctgaagctgatcacactgaa
atatcatcaaggaaccccacatcatcgaaagtatctgctctactaagcctccttcgggag
tcaagagatcaaaagccagctacaaagtcagttgttttctctcagttccgaactatgttg
ctactacttgaaaagccgctgacaaatgctggttttaagatattgcgtttagatggatca
atgaatgcaaaaaagagagctcaagtgattgaagagttccaagttccaggactagatggg
ccgacagttttgcttgcaagtctcaaggcttcaggtgcaggtatcaaccttacagctgct
tctagagtttacttgatagaaccatggtggaacccagctgttgaggaacaggctatggat
agggttcatcgtatcgggcagaaggaagatgtaaagattgtgaggctgattgctcgaaac
agcattgaagagagggtattggagttgcaagagaggaaaaagaaactagcaacagaagct
tttggaaggaagggccctaagcatcggaaagaagtcacgatagatgatcttcgcactctc
atgtccctatga

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