Gossypium hirsutum (upland cotton): 107935715
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Entry
107935715 CDS
T04793
Name
(RefSeq) nijmegen breakage syndrome 1 protein
KO
K10867
nibrin
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
107935715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ghi03032
]
107935715
03400 DNA repair and recombination proteins [BR:
ghi03400
]
107935715
DNA replication proteins [BR:
ghi03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
107935715
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
107935715
BRCA1-C complex
107935715
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
FHA
BRCT
Yop-YscD_cpl
PTCB-BRCT
Nbs1_C
PrpF
Motif
Other DBs
NCBI-GeneID:
107935715
NCBI-ProteinID:
XP_040964327
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Position
D12:8564737..8578156
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AA seq
554 aa
AA seq
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MVWALLPVDPSSAEQEEEEEEEDKYYIFKNGTYSVGRKGCDIIIHKDKGVSRIHAHIMVD
EMTQSCQVRIRDLSKYGTFINKNLSSNKKVHHFPNKQTFLEDGDLLSFGTGNATFRFSYV
PLVLYICCAEASQMNHHLQDKVSSIGARLTHVYSEDCTHVIVDQHVPLKRDMLDAIVAKK
PLLRTSWLELVAERSIQTKFPDCCSHVPTIMVDGVFVEVSDPKTRENCLGGYTFLLESTQ
VYKFGDRLQSLLEVSGSRVNYVEEICSSSQAFGCGENTCLTYVIPGRSVDKFDHLDNLGL
SYRVDEMALIRALLSGKLDQSILISSSVPVSSSCSTDETVVADSDEEIEMATSVNVNATT
CKEGAQNYVSRDGISMEAPSCVSKAEVPTCQDAIRLKDDRVTSKDDNCCLTARRDKADQV
TSKDDNCCLTARRDKADESEYGSSNIVYSQVLIVRDVNITSKNRFKEDNGVINYKRFRKA
SIQSGNSFNNLVPFSKHPYKDYEFGSGDLAESVKEEKKRKKMNAIADDMFNSEKGGRQRG
LSGSLRRGLLHTRG
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atggtttgggctttgcttcccgtcgatccttcctcagctgaacaagaagaagaagaagaa
gaagaagataagtactatattttcaagaatggaacgtattctgtgggtcgaaaagggtgt
gatatcatcattcacaaagacaagggagtgtccagaatccatgctcatataatggttgat
gaaatgactcaatcatgtcaagttcgaatcagagatttgtcaaagtacgggacattcatt
aacaagaatcttagttctaacaagaaagttcatcattttcctaataaacagaccttttta
gaagatggggacctcctttcttttggaacaggaaatgcaacctttcgattctcttatgtg
ccgcttgtactctatatctgctgtgctgaggcctcccagatgaatcatcatcttcaggac
aaagtttcatccattggtgctcgtcttactcatgtttacagtgaggattgtacacatgtg
attgttgatcaacatgtgcccctgaaaagggatatgcttgatgcaattgtggctaagaaa
ccgctcttacgtactagttggcttgagcttgtagctgagagaagtatccagactaagttt
cctgattgctgttcccatgttccaacaattatggtggatggagtatttgttgaagtttca
gacccaaaaacgcgtgaaaactgtttgggaggatacacctttctcttagaatctacacaa
gtgtacaagtttggggatagattgcagtctctgctggaagtgagtggctcaagggttaac
tatgttgaagaaatttgttcaagtagtcaggcctttgggtgtggagaaaatacttgtctt
acatacgtcatccctggaagatcagtagacaagtttgatcacttggataatctcggttta
tcatatagagtggatgagatggcattaatacgtgctcttttatctggaaaattggatcag
tctatattgatatcatcatcagtacctgtttcttcttcttgctccacagacgaaactgta
gtagcagattccgatgaggaaattgaaatggctacatcagttaatgtgaatgctactaca
tgtaaagaaggggcccagaattatgtgagcagagatggaatttccatggaagcacctagc
tgtgtgagcaaagcggaagtgcctacatgtcaggatgctattagattgaaggatgaccga
gtgacctctaaagatgataattgttgtttgacagcaagaagagacaaggctgaccaagtg
acctctaaagatgataattgttgtttgacagcaagaagagacaaggctgacgagtctgaa
tatggaagttctaatattgtttatagccaagttttaatagttagagatgtaaatataact
tccaaaaatagatttaaagaagacaacggtgttataaattacaagcgctttcgcaaggca
agcattcagtctggaaatagcttcaacaatcttgttccattttcgaagcatccttacaaa
gattatgaatttggaagtggggacttggccgaatctgttaaggaggagaaaaagagaaaa
aaaatgaatgccattgcagatgacatgtttaacagtgaaaagggggggagacagcgtggt
ttatcaggttctcttcgtcgtggacttcttcatacacggggttga
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