Gossypium hirsutum (upland cotton): 107936636
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Entry
107936636 CDS
T04793
Name
(RefSeq) polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107936636
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
107936636
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107936636
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
107936636
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
107936636
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Motif
Other DBs
NCBI-GeneID:
107936636
NCBI-ProteinID:
XP_016724884
UniProt:
A0A1U8MH67
LinkDB
All DBs
Position
A04:complement(59099712..59114186)
Genome browser
AA seq
1044 aa
AA seq
DB search
MENPRRSFDRSREPGLKKPRLTEDLTPNPNIRHFSQRTNPVGPASGLRFRSNDSDTNDLT
RGDGGAYEPQPVSHQQQHHQQQELVSQYKTALAELTFNSKPIITNLTIIAGENVHAAKAV
AATVCANILEVPSDQKLPSLYLLDSIVKNIGRDYIKCFAARLPEVFCKAYRQVDAPLHQS
MRHLFGTWKGVFPLQTLQVIEKELGFTPLVNSSSSGNTTSRMDTLSQRPPQSIHVNPKYL
EKQRLQQSSRAKGMVNDMAGTLANSKEESERPDRGRSIAGLSYGDHSVKMNTPGIEVRRT
RGNVTDQGLDAPWFGATSSITKTIPGQRNGFNIKPGSLNYSASKSVNADPRLQVTHNISG
RNSSGLSSSWKNSEEEEFMWEMHSRLSELDAANFSNNLRRDRWTPDVSEKMDFESQLHRP
QSIHDAGSRFDRDTSADALSTEQDKTSFGRQISTACTDGLPAMSSRRTESYSATVGGLPT
GASSSLTSIGMRPQTNSSRLGASGVEILTNVASGSTGTSGKQRFQPMGTASPPEQSPMRQ
HSPSPSFPARHPHQQLQKLTDPDYQQAVSLLPADLKPSNFSVKLNVGSHRRSPHTSASLH
PSLRSHLSQPPQPDSVQAEPSGQTQKPLPSQISKVEAASTLGSALEHSNPLAIQSSELSS
TSNLLAAVMKCGILSSTSFTGSLPTKISQDGGQISQPSVPNRPPAVLTTSGLMLDSAISS
GSATHDSIAATPNSSREKVEQLPLPPGPPPSSLVSNAPSPTSDAESKDTNPISNLLSSLV
AKGLISAAKKGAASLPMPIQIQKSPGIERPTESLNKNSDIQSSSDAPRSSTMDEIPHAEP
APKCSVASHQFTSTEVESFIGLELRPDVIREFHSSVISGLLDDLPHCCSLCGLRLKLQGR
LDRHLEWHEMKKTESRGSGRALRGWYPKLDDWLAGKPGQLVFGSTGSLNKLEKTTEKAEL
MVPADENQCACLLCGELFEDYFSLNRGEWMFKGAAYLAIPSKEGGVGTTDGCAAYSPIVH
VNCMSESSVLDLGLSGDIKVEMEE
NT seq
3135 nt
NT seq
+upstream
nt +downstream
nt
atggagaatccgcgtagatcatttgatagatcaagagaacctggtttgaaaaaaccacgg
ttaactgaagacctcactccgaaccctaatatccggcatttttctcaacgaacgaaccca
gttggtcccgcctctggtttgagattccggtccaatgattccgacaccaatgatttgacc
cgtggcgacggtggagcttacgagccacaaccagtgtcacatcagcagcaacaccaccag
cagcaagagttagttagccagtataagacggcgttagctgagctcacttttaactcgaaa
ccaattattactaacttgacaataatcgctggcgagaatgttcatgccgccaaggccgtt
gctgcaactgtctgcgctaatattcttgaggttcccagtgaccaaaagctgccatcactc
tatcttttagatagtattgtaaagaatattgggagagactacattaaatgttttgctgcc
agattacctgaggtgttctgcaaagcatatagacaagttgatgctcccttgcatcagagt
atgcgacatctttttggaacctggaaaggggtattccctcttcagactctccaagtgatt
gaaaaggaacttggcttcactcctttggtaaatagttcatcttcaggaaacacaacatct
agaatggacacactgtcacagcgtccaccacaaagcattcatgtaaacccgaagtatcta
gagaagcagcgtcttcaacaatcaagcagggcaaaaggtatggtcaatgatatggctggg
actttggccaactcaaaggaggagtctgagaggccagatagaggacgcagcatagctgga
ctgtcgtacggagatcattctgttaaaatgaatactcctggcatagaagttagaagaacc
agggggaatgttactgatcaggggcttgatgcaccttggtttggagctacaagcagcatt
actaagactattcccggccagaggaatggtttcaacattaagcctggatctctaaattac
tcagcatccaaatctgtgaatgctgatcctcgtttacaggtaacacataacatttctggt
agaaacagcagtgggttgtctagcagctggaaaaactctgaggaggaggagtttatgtgg
gagatgcactctaggttgtctgaacttgatgcagccaacttctctaataacttgaggaga
gatcgttggactcctgatgtttcagaaaaaatggattttgaaagtcagctccacagacct
caaagcattcatgatgcggggtcaaggtttgatagagatacttctgctgatgcattatcc
actgagcaggacaaaacttcatttgggcgtcagatttctactgcatgtacagatggtttg
cctgctatgagttcaagacgtactgaaagctattctgctactgttggtgggttgcctact
ggtgcaagttcttccttgaccagtataggaatgcgaccacaaacaaattcatcccgtttg
ggagcctcaggtgtcgagattttgacgaatgtggcatcaggatccacaggtacttcagga
aagcagcgttttcagcccatgggaactgcatcacctcctgaacagtctcctatgcgccaa
cattcaccttcaccttcttttcctgcacgccatccccatcaacagctacagaaattgact
gatccagactatcagcaagctgtttccctgcttccggctgatctgaaaccatccaatttt
tcagtgaagttaaatgttgggtctcatagacgctctcctcatacttctgcttctttgcat
cctagccttcgttctcacctttcacagcctccacaaccagactctgtgcaggctgaacct
tctggtcagactcagaagcctcttccgtctcaaatctccaaagtagaagcagcctcaaca
cttggaagtgcattggagcattccaatcctcttgcaattcaatcttcagaattatcaagt
acgagtaatctattagctgctgtaatgaagtgtggaatcctctccagcacttcatttact
ggaagccttccaactaagatttctcaagatggggggcaaatttctcagccttcagtccca
aatcggcctcctgctgttttaacaacctcaggtttgatgcttgatagtgcaatttcatct
ggttctgcaacccatgattcaatagcagctacaccaaatagttcccgggaaaaagtagaa
cagctgccactgcctcctggaccaccaccttcatctcttgttagtaatgccccatcacca
acttctgatgctgaaagcaaggatacaaatcctatatccaaccttctgagctcattagtt
gccaaaggtttgatatctgcggcaaagaagggtgctgcatctcttccaatgcccatccaa
atacaaaagagcccaggaattgagaggccaactgaatcactgaacaagaattcagacatt
cagagttcatctgatgctcctcgatcctccacaatggatgagataccacatgctgaacct
gctccgaaatgttcagttgcctcacatcagttcacctcaacagaagtagaaagcttcata
ggattagaactcaggcccgacgtaatcagagaatttcattcatctgtgatcagtggattg
ttggatgaccttccacattgttgcagcctatgtggtcttcgacttaagcttcagggaagg
cttgatagacacttagagtggcatgaaatgaagaaaactgaatcaagaggttctggtagg
gcattgaggggatggtacccaaagttagatgattggcttgctggaaagcctgggcaattg
gtatttggttccactggttctctgaacaagttggaaaagacaacagaaaaggctgagctt
atggttcctgcagatgaaaatcagtgtgcatgcttgttatgcggcgagctatttgaagat
tattttagcctgaacaggggtgaatggatgtttaagggagcagcatacttggctatccca
tcaaaggagggtggggtgggaactactgatggctgtgcagcctacagccccattgtgcat
gtaaattgcatgtcagaaagttcagttctggatttgggactttctggtgatattaaagtg
gaaatggaagaataa
DBGET
integrated database retrieval system
