KEGG   Gossypium hirsutum (upland cotton): 107936696
Entry
107936696         CDS       T04793                                 
Name
(RefSeq) lysine-specific demethylase 5D isoform X1
  KO
K11446  [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
Organism
ghi  Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:ghi01009]
    107936696
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ghi03036]
    107936696
Enzymes [BR:ghi01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     107936696
Protein phosphatases and associated proteins [BR:ghi01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     107936696
Chromosome and associated proteins [BR:ghi03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    107936696
SSDB
Motif
Pfam: JmjC PLU-1 PHD zf-C5HC2 KDM5_C-hel BT_3657-like_N
Other DBs
NCBI-GeneID: 107936696
NCBI-ProteinID: XP_016724936
UniProt: A0A1U8MDP0
LinkDB
Position
D08:complement(61026588..61040187)
AA seq 1583 aa
MLLCDRCNKGWHIYCLSPPLKQVPPGNWYCFECLNSDKDSFGFIPGKQFTLEAFRRLADR
ANKKWFGSGCASRVQIEKKFWEIVEGLAGDVEVMYGSDLDTSVHGSGFPRVNDQRPESVE
PKAWDEYCKSPWNLNNLPKLKGSMLRAVHHNITGVMVPWLYIGMLFSAFCWHFEDHCFYS
MNYLHWGEPKCWYSVPGSEASAFEKVMRDCLPDLFDAQPDLLFQLVTMLNPSVLRENGVP
VYSVLQEPGNFVITFPRSYHGGFNLGLNCAEAVNFAPADWLPHGGSGAELYQLYRKAPVL
SHEELLCVVAKQSDWDKNASTYLRKELLRMYKKERTFRERLWLSGITRSSPMSPRRSPEF
VGTEEDPTCIICKQYLYLSAVVCRCRPSAFVCLEHWEHLCECKSSKHCLLYRHTLAELAD
LVLIVDKHESEEMPQSDSLLGNISSSSELNSLKKKVKGAHVTHAQLAEQWLSQACKIFQS
PFSGDAYATLLKEAEQFLWAGAEMDSVRDVVKNLTAARKWVQGIRDCLSKIENWSAGGDF
EKVAHKRVKKLLSVDPVPCNEPGYHKLKHCTEEANLLVHDIDAALSTFSKLDELELLYSR
ACSSSIHVEQILKLSQKISLVKVWIDNARKAISNEQPAAVEVDILYKLKTEILELQVQVQ
EKEMIFDLVSQAESCQARCRSLLSGSVTLKDVEVLLQEMASFSVNIPELALLKQYQIDAS
LWITKLNDIMINIHQREDQQSVINELNRILEDGESLKIQVDELSLVKIELKKACCREKAI
KARNSKMALDFLQQLLADAVILQIEREDLFISLSRELAGALQWEERAKDILACKAQMSEF
EDLIRMSEDIVAIMPSLGDVKAAILVANSWLNNSKPFLEPDLSGSSTSRSLLKLDDLKEL
VSESRFLKITFKQQNVLETILENSKRWQHDAYSLLQDVECLYSVTDIGDGRSNGLILKIE
HIVNLIESISKAGLSFGLDFPEIPKLQNACSTLHWCNKVLSFCYLMPSYEDVESLMNISE
QLSIMHSSCNLLSSLIFGAKWLKKVSEVISAPVKCNACKLTDAEEMLAAYQDISVAFPMM
VAQLTEATCKHRLWQEQVHQFFSLEMGERSWSQLMLLEEYGKASFFTCPEVDIVVSEVEK
VEKWKQRCMDAVKTFAGDESSLLCALLKIKGSLDRSLYIYEKSDCFYMCCMSGSEDWDFL
TCSTCKDCYHLQCLEYRRNNAEEAYTCSYCQLLVGGLIPPNRCGFLRHNGKYSDLKLLSD
LLFVDEKFCVRIEEREILQQIVDQAYACKKCLTEILDFEMSCYNKDQFTAVGKKLTTAWK
AFGVAGVYDHQSYCDLERALARFSWRFQVARLLDALEKDLEKPSVQQIFQHLKEGDAMNI
SPEDHLRLKLSELKDIGLQWVDRAKKVAADCGALGLDGVYELITEGERLPVCLKKELELL
RARSRLHCICRKPYDERSMIVCGRCDEWYHIRCVNLAFPPKVYICAACMPGTQHLVSSFD
SLMDHERCTVEPKTPSPRHKKPRTGPKKSESSATQKMLIGDENGSGIGHLRWRNRKPFRR
AAKKRAELDSLTSFFHRPQPIIT
NT seq 4752 nt   +upstreamnt  +downstreamnt
atgctactatgtgatagatgtaataaggggtggcatatatattgtctgtcaccaccgttg
aagcaggtcccaccgggtaactggtattgctttgagtgcctgaattctgacaaagatagt
tttggttttattcctggaaaacaatttacattggaagcttttaggcgtttggctgatcga
gccaataagaaatggtttggatcaggatgtgcttcgagagtacagatagagaaaaagttt
tgggagatcgtggagggtttggcaggtgatgtggaagttatgtatggaagtgacctggat
acttctgttcatgggagtggttttccacgtgtaaatgaccagaggccagaatctgttgag
cctaaagcatgggatgaatactgtaagagtccgtggaatctcaataacttgcccaagctg
aaaggttcaatgctgagggctgttcatcataacattactggtgtcatggttccctggctg
tatattggaatgctgttctcagctttctgctggcattttgaagatcattgtttttattca
atgaattaccttcactggggagagcctaaatgttggtacagtgtccctggtagtgaagct
agtgcttttgagaaggtgatgcgggattgtctccctgatctgtttgatgcacaacctgac
ttgctgtttcagcttgttaccatgttaaatccttctgtcttgcgagaaaatggtgtccca
gtctacagtgtgctacaggagccaggaaattttgtcattactttccctagatcttaccat
ggaggattcaatttgggtttaaattgtgcagaggcagtaaattttgctcctgctgattgg
ttaccacatggtgggtctggggcagagctgtatcagttgtatcgtaaagctccagtttta
tctcatgaggagcttctttgtgtggtagccaagcagagtgattgggataaaaatgcatca
acttatttgagaaaagaattgctcagaatgtataagaaagaaaggacatttagggagagg
ctttggctaagtggcataacaagatcatctcccatgtctcctcggagatctcctgaattt
gtgggcacagaagaggatccaacatgcattatatgcaagcagtatttgtatctttctgct
gttgtttgccgctgcaggccatctgcttttgtctgcctggagcattgggagcacctctgt
gagtgcaaatccagtaaacattgtcttctatatcgtcatactctggcagaattggctgat
ttggtgcttatagtggacaagcatgagtcggaggagatgccacaaagtgatagtttactt
gggaatatctcatcttccagtgaattgaattctttaaaaaagaaggtgaaaggtgcccat
gttactcatgctcaacttgcagagcaatggctttcacaggcgtgtaagatttttcagagt
cctttttcaggtgatgcatatgctaccctgttgaaggaagctgaacagtttctctgggct
ggtgccgagatggattccgtacgcgatgtggtgaagaatctgactgcagctcggaaatgg
gtgcaaggaataagagactgtctttctaaaattgaaaattggtctgctggaggtgatttt
gagaaagtggcacataaacgggttaagaaattgcttagtgttgatcctgttccctgtaat
gagcccggatatcataagttgaagcattgcaccgaagaggccaatttgttggttcatgat
attgatgctgctttatcaacattctctaagcttgatgagttggagttgttgtattcaagg
gcttgcagctcatcaatacatgtagaacaaattctgaagttatcacaaaaaatctctttg
gtgaaggtatggatagacaatgcaagaaaagccatctccaatgaacagccagcagcagtt
gaggttgacattctttacaagttaaaaacagagatattggagcttcaggtccaagttcag
gaaaaagaaatgatttttgatcttgtaagccaggctgaatcttgtcaagcccggtgtaga
tctttattgagtggttctgttactctaaaggatgtggaagtgcttcttcaagaaatggca
agtttcagtgttaacataccagagttggcacttctgaagcaataccagattgatgcttct
ttgtggatcacaaagttaaatgatattatgataaatatccatcagagagaggatcaacaa
agtgttattaatgaattaaatcgtattttagaagatggagaatcactgaagattcaagtt
gatgagttgtcacttgtgaagattgagttgaagaaggcttgttgcagggaaaaggcaata
aaggcacgcaattcaaaaatggctttggactttcttcagcaactgttggcagatgctgtt
attttgcaaattgagagagaggatttatttattagtttgtctagagaacttgctggtgct
ctgcagtgggaagaaagagctaaggatatacttgcttgcaaggctcagatgtctgaattt
gaggatcttataaggatgtcggaggacatagttgctataatgccttctttaggtgatgtc
aaagccgcaatattggtggcaaactcatggttaaataatagcaagccatttttagaacct
gatttgtctggctcatctacatctcgttctttgctgaaacttgatgatctgaaggagttg
gtttctgagtcaagatttctgaagataacttttaagcaacaaaatgtgcttgaaacaatt
ttggaaaatagcaagagatggcagcatgatgcctattccctactgcaagatgtggagtgc
ctgtatagtgtgactgacattggtgatggcaggagcaatggtcttattttgaaaattgaa
catattgttaacttgatagaatctatctcaaaagctggtttatcttttggactggatttt
cctgagattccaaagcttcaaaatgcttgttcaacgctgcattggtgcaataaagttctt
tctttctgctatttgatgccttcttatgaggatgttgagagtttgatgaatatctcggag
cagctttctattatgcattcttcatgtaatttgttgagctccttaattttcggagcgaaa
tggcttaagaaggtttcagaggtgatttccgcacctgtgaagtgtaatgcatgcaaattg
actgatgctgaagaaatgcttgctgcatatcaggatattagtgttgccttcccaatgatg
gttgcacaacttacagaggctacctgcaaacataggttgtggcaggagcaggtgcatcag
ttttttagtttagagatgggggagcgatcgtggtctcagttaatgctgcttgaggagtat
ggaaaagcttctttctttacatgtccagaggtagatattgtcgtgtctgaagttgaaaag
gttgagaagtggaagcagcgctgcatggatgctgtaaagacctttgctggagatgagagc
tcactgctctgtgccttgctgaagatcaaagggtccctagatagatctctgtatatatac
gaaaagtcagattgtttctacatgtgctgtatgagtggttctgaggattgggatttttta
acatgttcaacatgcaaggactgctaccatttgcagtgcctagaatatagaagaaataat
gcagaagaagcatatacatgctcatattgtcagcttcttgtgggtggattaatacctccc
aatagatgtggcttcttgaggcataatggcaagtattcagacttgaagcttctctctgat
cttctctttgttgatgaaaagttttgtgtaaggattgaagaaagagagatattacagcaa
attgtggaccaagcttatgcttgcaaaaagtgtttgacagagatactggactttgaaatg
tcctgctataataaagatcaatttactgctgttggtaaaaaacttactactgcttggaag
gcctttggagtggcaggtgtatatgatcatcaaagttattgtgatcttgagcgggcatta
gctagattctcttggagattccaagttgctagattgttagatgctttagagaaggattta
gagaagccttcagtccaacagatttttcagcacctgaaagagggagatgccatgaacatt
tcacctgaagatcacctaagattgaagctttccgaattgaaggacattggattgcagtgg
gtggatcgtgccaagaaggttgcagcagattgtggggcacttggcttagatggagtttat
gaacttatcacagagggggaaaggttgccagtttgcttaaagaaggaactcgagttgtta
agagcccgaagtaggcttcattgcatttgtcgaaagccgtatgatgaaagatcaatgatc
gtttgcggtcgatgtgatgagtggtaccacataagatgtgttaatttagcgttcccacca
aaggtttatatctgtgcagcatgtatgcctgggactcaacatttggtgtcctcttttgac
tcattgatggatcatgaaagatgtacggtggagccgaaaaccccatctcctcggcataaa
aaaccaagaacgggaccaaagaaatcggagtctagtgccacacaaaaaatgctgattggt
gatgagaatgggagtgggataggtcatttgaggtggcgaaatcggaagccttttaggaga
gcagcgaagaagcgcgctgagcttgatagtcttacttcatttttccatagaccacaacca
ataatcacataa

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