Gossypium hirsutum (upland cotton): 107936805
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Entry
107936805 CDS
T04793
Name
(RefSeq) DNA repair protein RAD4
KO
K10838
xeroderma pigmentosum group C-complementing protein
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
107936805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ghi03400
]
107936805
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
107936805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BHD_3
Rad4
BHD_1
BHD_2
Transglut_core
Motif
Other DBs
NCBI-GeneID:
107936805
NCBI-ProteinID:
XP_016725062
UniProt:
A0A1U8MDY6
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Position
A07:11881689..11886673
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AA seq
983 aa
AA seq
DB search
MRNRDKSKSQTQYSGTLARKSQEGVNKLLRRSSRLSSSGKKEQDGFSLENDPKTNEQEVV
HTMDVCNASTVEGCHRDAIENSQAKEQEVVHSMDVCNASMVEDCHREAIENSQAKEQEVV
HSMDAHNASPGDDCHKDTLLDDSEEMNDSDWEDGPILKPDPVDRSPNERMKGLTIEFDEP
SGSTGGRKPVRRASAEDKELAEFVHKVHLLCLLARGRLIDNACDDSLIQASLLSLLPTHL
LKISEVSNITANALTPLVAWFHDNFHVRNLARAERSFRTALATALETHEGTPEEIAALSV
ALFRALKFTARFVSILDVASLKPEADKYEPSNQAAERVSGGIFSTSTLMVDNLKRASIAP
SPFQTSPCNEKDDYGKSSHKSKGGCSTSNIAQSRGSTSVNESTDGKSTCQVQLDTSQQCV
PKNSQGLKRKGDLEFEMQLAMAISATSVETHENIHDSSNGNNSLEASIPTKRWKRIERVE
SASCSQGFSTALGSRKVGSPLFWAEVYCDGENLTGKWVHVDAVNAIIDGEQKVEDAAAAC
KTLLRYVVAFAGHGAKDVTRRYCMKWYKIAPKRVNSTWWDSVLAPLRQLESGGTGGTIKV
SEHPGENSSLNHVILPEKSGQEASKEYGSKIEVESSVKDSFVATRNSLEDMELETRALTE
PLPTNQQAYKNHALYALERWLTKYQILHPKGPILGFCSGHPVYPRSCVQTLKTRERWLRE
GLQIKGTETPIKVLEQSSKLKKVQVSEDVCDEIDSKETIELYGKWQLEPLLLPRAVNGIV
PKNEHGQVDVWSEKCLPPGTVHLRLPRVFVVAKRLEIDYAPAMVGFEFRNGRAVPVYDGI
VVCTEFKDAILEAYAEEEERRAAVEKKRTEAQAISRWYQLLSSVITRQKLNSYYRDSSSS
QPSGNIQDKNIETKTPVQSSKDSKQPTAHRKANNQDTTHTTSLVALEVGHEHVFLTKNES
FDPENSIRTKRCECGFSIQVEEL
NT seq
2952 nt
NT seq
+upstream
nt +downstream
nt
atgagaaacagagacaagtctaaaagccaaacccaatattctggaacacttgctaggaaa
tcacaggagggagtgaacaaacttctaagacgatccagtagactcagctcttcggggaag
aaggaacaagatggattttccctggaaaacgatccaaaaacaaatgaacaagaagttgta
catacaatggatgtgtgcaatgcttcaacggttgaaggttgtcatagagatgccatagaa
aattctcaagcaaaggaacaagaagttgtacattcaatggatgtgtgcaatgcttcaatg
gttgaagattgtcatagagaagccatagaaaattctcaagcaaaggaacaagaagttgta
cattcaatggatgcacacaatgcttcaccgggtgatgattgtcataaagatactcttctc
gatgatagtgaagaaatgaatgattcagattgggaagatggtccgattcttaaaccagat
cctgtagaccgttctccaaatgaacggatgaaggggttaactattgaatttgatgagcca
tcaggttcaactggaggacggaagcctgttcgtcgagcctctgctgaagacaaggaattg
gctgaatttgtccataaggttcatttgctttgtttacttgcgaggggcagattaatagac
aatgcctgcgatgattctcttattcaggcttctttactttctcttctacctacacactta
ctgaagatatcggaagtctcgaatatcactgcaaacgctttgactcctcttgttgcttgg
ttccatgataactttcatgtgagaaacttagctcgtgcggaaagatcatttcgtactgct
ttggctacagctcttgaaactcatgagggaactccagaagagattgcagctttatcggtg
gcattatttagagctttgaagtttacggcacggtttgtgtccattttggacgttgcctcc
ttaaaacccgaggctgataaatatgaaccttcaaaccaagcggcagaaagagtgagtgga
gggatattcagtacttcaacactaatggtggataacctgaaaagagcttctattgctcca
tctccatttcaaacatccccatgcaacgagaaagatgattatggcaaaagttcacacaaa
agtaaaggtggctgctcaacgagcaacattgctcaatccaggggctctacttctgttaat
gaatcaactgatggaaaatcaacctgtcaggtgcaactggatacatctcaacaatgtgtt
cctaaaaattctcaagggttgaagaggaaaggggatctcgagtttgagatgcagttggca
atggctatttctgctactagtgttgagactcatgaaaacattcatgactcatccaatggt
aataactcattagaagcatctattcctacgaaaagatggaaaaggatcgaaagagtagaa
tctgcttcttgttcccaaggattttctactgcacttgggtcaagaaaagtaggatcacca
ttgttttgggcagaagtgtactgtgatggagagaacttgaccgggaaatgggtgcatgtc
gatgctgtgaatgcgattatagatggagaacagaaagtagaagacgcagctgctgcatgc
aaaacattgttgagatatgtagttgcttttgcaggtcatggtgctaaagatgtgacccgc
aggtattgcatgaagtggtacaaaatagcaccgaaacgagttaattcaacttggtgggat
tccgtattagcacctttgaggcagttagagtcaggaggaacggggggtacaattaaagta
tctgaacatccaggtgaaaatagtagtttgaaccatgttatcttacccgagaagtcaggt
caagaagcttccaaagagtatggtagtaagatcgaagttgaatcttctgtgaaggactct
ttcgttgccaccaggaactctcttgaagatatggaactggaaactcgggcattaactgag
ccccttcctactaatcagcaggcctataaaaaccatgcattgtatgcacttgaaaggtgg
cttacaaagtatcagattctacatccaaaaggtccaattcttggtttctgctctggtcat
ccggtatatcctcgctcttgtgtgcaaactctcaagacacgagaaagatggttgcgcgaa
ggactgcagatcaaaggcaccgagactcccataaaggtattggaacaatcttcaaaacta
aagaaagttcaagtttccgaagatgtttgtgatgaaattgattctaaagaaactattgaa
ctttacgggaagtggcagctcgagccactgcttctccctcgtgctgttaatggaattgtg
ccaaagaacgagcatggacaagttgatgtatggtccgagaagtgccttccaccagggact
gttcatttaagattgccaagggtatttgttgttgccaagaggctggaaattgattatgca
ccggctatggttggttttgagtttagaaatggtcgtgctgttcccgtctatgatggaatc
gtggtctgtacagagttcaaggatgcaatattagaggcctatgccgaagaagaagaaaga
agagcagccgtagagaagaaacgaaccgaagcacaagctatctcaagatggtatcaactt
ctctcatccgtcataaccagacaaaagttgaacagctattaccgagacagttcgtcatca
caaccatccggaaacatccaagataaaaatattgagaccaaaactccagttcaaagcagc
aaggacagtaaacaacctacagcccatcggaaagcaaataaccaagataccacgcatacc
acttcattggtagcactagaggtaggccacgaacatgtctttttaaccaaaaacgaaagt
ttcgacccagagaactcaatccgaaccaagcgatgcgagtgtggattttctatccaagtg
gaagaattatag
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