Gossypium hirsutum (upland cotton): 107936874
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Entry
107936874 CDS
T04793
Name
(RefSeq) LOW QUALITY PROTEIN: protein SHORTAGE IN CHIASMATA 1-like
KO
K28108
shortage in chiasmata 1
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ghi03036
]
107936874
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Meiosis-specific proteins
Others
107936874
BRITE hierarchy
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Ortholog
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GFIT
Other DBs
NCBI-GeneID:
107936874
NCBI-ProteinID:
XP_040939682
UniProt:
A0ABM2ZAF6
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Position
A12:107541616..107551174
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AA seq
1736 aa
AA seq
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MRTRFLNVDYLSAFQSPAETLSFLNLPPPHFPPHTSNFTDDLLHFDSFLNLPLQTERLPI
DAALSNFLSEAIPPFIDVDIRDFEDTRFPSGNASAKFSTEEETTVCNEKEAGSQRTFGSE
IQEEDNVTCGADKDVRRLDVILFETPELDTFLDNAHFSKKEIETFSGISEIDNNKDETGP
ILQFPDKIQESVYSVEDVISECNREQNIYMLEEDSSFGGREPLQHSTFPILEVDEISLGI
MTSHSIDDVLPTAFESIESQLWTQENDVLTDSKELLGSIGNDILKFLSDLCSVEKYPEPE
LAFPEMFLDVNIICMVETPQADGNSELVMAKQDAGYLFPTNLVIFEEFQIFDVDLSQNFD
VFLNRQITHEPEACNHMFKEDMNFKSFSELVVSHELVLVDETFKSLPIPVLSDHGRLRLP
CTVIEELLSDLKPLPLSASDGIYLDWYILEDDKCSSKVHALFQNMMEEIDATSIDFEQES
FEGSKLVSDFIFSDDALTGSATEQYEEVPNVTFDRVPMLNDNFMAVESNKLQDNGFPKPG
NSEQLAEKDDKRASLLFKTMSQFNDLAFFLNPQKSSARENAGPEAMSSNPKAELPNVSSG
RSVEACESTGLQSQVNGPDFFLNPQKSIAREDAAPAARSFNRKAESPNGLSGHSVEARAY
TGLPLQVNDLDFFLNPQKSSTRDNAGPAAMSFNPRSELPNVSSGHSVEACASTGLLLQQW
DIMVYNXKLSDDILALIENFEKCYLAILQNETELISFLGEDRYELLSLPKKKLMDCIKKX
MARRNTSHGDEDIMAFVTLCAIKQMAWYMCFYGINAAHLYVDKLCRSLGCIKSRLSFLHS
LIEDARGKVDKEITTSHPSLCVIRGILQSKSSSSNSKVLILAEQVFWWSLKSLLMSMGLS
WNELSSFCANANPSGAYKMDSQLISDCWLVSQENVSASFPFNKFNVIVEYGGFCGSSRVS
SFPPKSVGLTHLHFLKIELDDSSASKALCEGVDIPQIAKKLTEGEFHSILALNVNYENVE
DLLNFVPIVDKHNKGSVGSGKEEEAYSLPLPVAVETNPNPQRLADMVIIVNIQNFDKEMI
VSRRSTYQKILAMEKEGAQVVERDSNLPVDVIISSAICLVWYDSRNIGRKAAISDETSSC
LQLCIENIATNILTLLSFTFSGCFLVFEGGIGFLSTVMESSAGLYAAAASLGIDFQLFCS
YSSESTDEIIQNCIDYAAKTTRGRYPKMPDSETLAESFLTKFPSVNPLTAHAILSSGGML
VEFLQWSHESRIQAVQNYCVPDESIALFSALCKYGEREDSKSVMTDCSSSVSSGRNSDKC
HYNVGSQGKQGKRKNSSNKVSTRMDESQHFEPVSKDEILHPSGLSKQYDSWKSTGSEMFQ
DYKKLSSSLNDIFDQEQDFGFLPQFPGRYDSDIYEGPNMLKEAKKPKLDVPLKDNIWDYN
LGENAGMLNSLDWQITNSFENKREELTSEVTDFADSPMSGEDFSCFGNSNPFSSLVSEIE
EDSTSKSKIARRLSFTKDSHTVFPYVSEINIGSDMLSSVTCPRQGLVGTSPNSDASPSNQ
ENSIRDVLAQRSAACKGSLLKNDVSNHSATSLSRAILSNQPQLDSPWTIEFLNRIREKSR
LRQQNLPSDTSASPFGRSGNIAKVPKRRSPSILEFFKYQGGNTPKKILEQRKQKRPPQAS
SSSKNKKTSSSLTQTSTPTDKRTRQTLSFEMNGSGSQTKLVWRDGGAHGLSKKVRY
NT seq
5211 nt
NT seq
+upstream
nt +downstream
nt
atgcgaactcgatttctcaacgtcgattacttgagcgcctttcaatccccagccgaaacc
ctaagcttcctcaacctaccgcctcctcacttccctcctcatacttccaacttcactgac
gatcttcttcactttgattcgttcctcaacctccctctccagaccgagagattgcctatc
gatgccgctctctccaacttcttgtcggaagcaattcctccgttcatcgatgtcgatatc
agagatttcgaggatactcggtttccaagtggaaatgccagcgcaaagttctccaccgag
gaggaaactacggtttgtaatgagaaggaagcagggagtcagagaacttttggatcagaa
attcaggaggaggataatgtaacctgtggagctgataaggatgttcggaggttagacgtg
atactgtttgaaacacccgagctggatacttttttggataatgcccacttttccaagaaa
gagattgagacattttctggaatttcagagattgataataataaggatgagacgggccct
atactgcagtttcctgacaagattcaagaatcagtttattcagttgaagatgttatttca
gagtgcaacagggagcaaaatatttatatgctggaagaggatagttcttttggaggtcga
gagcccttacagcatagcaccttccccattttggaggtggacgaaataagtctgggtatc
atgacaagtcattctatcgatgatgtacttcctactgcttttgaatctattgaatcccag
ctgtggactcaagaaaatgatgtgcttactgacagcaaggagctcttgggctctattggg
aatgatatcttaaagtttctttctgatctctgttcagtggaaaaatatccggaacctgag
ctagccttcccagagatgttcctggatgtgaacattatatgcatggtggaaactcctcaa
gctgatgggaattctgaacttgttatggcaaaacaggatgctggttatctttttcccaca
aacctcgttatttttgaggaattccagatttttgatgttgatttatctcaaaactttgat
gtgtttttgaacagacaaataacccacgagccagaagcatgtaaccatatgttcaaggaa
gacatgaatttcaagagtttcagtgaattggttgttagtcatgaacttgtgttggtagat
gaaacattcaaatctttgcctatacctgttctctcggatcatggaaggttgaggttacca
tgcacagttatcgaggaattactgtctgatttgaagccgctgcccctatctgcatctgat
ggtatctacttggactggtatatattggaagatgataaatgcagcagtaaagttcatgct
ttgtttcagaatatgatggaggagatagatgctaccagcattgattttgaacaggaaagt
tttgagggtagcaagttagtttctgacttcattttctcagatgatgctttaacaggatca
gctactgaacaatacgaggaagtaccgaatgtaacttttgatcgcgtacctatgcttaat
gataattttatggctgttgagtccaataagttacaagacaacggtttcccaaaaccagga
aactcggaacaattagcagaaaaagatgataagagggcttcattactattcaagactatg
tcacaattcaatgatcttgcttttttcttgaatccccagaaaagtagcgctagagaaaat
gctggacctgaggccatgtcttccaatccaaaggctgaattacccaatgtttcatctggt
cgttcagttgaagcatgtgaatccactggtctacagtcacaagtcaatggtccagatttt
ttcttgaatccccagaaaagtattgctagagaagatgctgcacctgcggccaggtctttt
aaccgaaaggctgaatcacccaatggtttatctggtcattcagttgaagcacgtgcttac
actgggctaccgttacaagtcaatgatcttgattttttcttgaatccccagaaaagtagc
actagagataatgctggacctgcggccatgtcattcaacccaaggtctgaattacccaat
gtttcatctggtcattcagttgaagcatgtgcatccacgggtctactattgcagcagtgg
gatatcatggtttacaatnataaattgtcagatgatatcttggcactgattgaaaatttt
gaaaagtgctatctagctatcttgcagaatgagacagagctaatttcatttttgggagaa
gataggtatgaattgcttagccttccaaagaaaaagttaatggactgtattaagaaanaa
atggcacgaagaaatacttcccatggtgatgaagatattatggcatttgtcacgttgtgc
gctattaagcaaatggcttggtacatgtgtttctatggcatcaatgcagctcacttatac
gtagacaagctatgtcgaagccttgggtgcataaagtcaagattaagtttccttcattcc
ttgattgaggatgctcgtggcaaggttgataaggaaataactacatcacatccctcactc
tgtgttatacggggaattttacagtcaaagtccagctcaagtaattccaaagtgttgatc
ttggcagagcaagtcttctggtggtctttgaagagtttgttgatgtctatgggattatcc
tggaacgagctatcaagtttctgcgcaaacgcaaatccatcaggtgcctataagatggat
tctcagctaatttcagattgttggttggtatctcaggagaatgtttctgcatcttttcca
ttcaacaagttcaacgttattgtggaatatggaggcttttgtggctcatctagagtatct
tctttcccccccaaatctgttggcttgactcatcttcactttctgaagattgaactggat
gactctagtgcttccaaagcactttgcgaaggtgttgatatcccccagattgcaaagaag
ttgacggaaggggagtttcattcaatcctggcccttaatgtgaactacgagaatgtggag
gacctactgaactttgtacccattgtagacaagcataacaaggggtctgtcggaagtggg
aaagaagaagaagcctatagtttgcctctgccagttgcagttgaaaccaatccaaacccg
cagagattggcagacatggtaattattgtgaacattcaaaattttgataaggaaatgatc
gtatccagaagatctacttatcaaaaaattcttgcaatggagaaagaaggagctcaagta
gtggaacgcgattcaaatcttccagtggatgtcataattagctctgcaatttgcctagta
tggtatgattccagaaacataggaaggaaagctgccatttcagatgaaacatcttcttgc
ttacagttgtgcattgagaatattgcaactaacattttgacattgctgagttttactttc
agtggctgtttcctggtatttgagggaggcattggcttcctttctactgtaatggaatcc
tcagctggactctatgcagcagcagcaagtttgggaattgacttccagctattttgttct
tattcatctgaatcaactgatgaaattatacaaaactgcattgactatgctgcaaagacg
accaggggccgatatccaaagatgcctgattcagaaactcttgcagaatcgttccttact
aaatttccttcagttaatcctttgacagcgcatgcaatactctcttcgggaggaatgctc
gttgagttccttcagtggtcacatgaaagcaggattcaggcagttcaaaactactgtgta
ccagatgaaagtattgctcttttcagtgctttgtgcaagtacggtgagcgggaggactca
aaatctgtaatgacagactgctcttcttctgtatcttcgggtcgtaactccgacaagtgt
cattacaatgttggttctcaaggaaaacaaggcaaacgcaaaaatagctctaataaagtc
agcacaaggatggatgaatcacagcattttgagcctgtgagcaaagatgagatcctccat
ccttctggactgtcgaagcaatatgattcttggaaatctacaggttctgagatgttccag
gattacaaaaagctcagttcatctttaaatgatatatttgatcaagagcaggattttggt
tttctccctcaatttcctgggcgatatgattctgacatctatgaaggtcctaacatgtta
aaagaggcaaaaaagcccaaactcgatgtacccttgaaagataatatatgggattacaat
ctgggagaaaatgcaggtatgctgaatagtttggactggcaaatcaccaatagctttgag
aataagcgcgaagaacttacaagtgaagttactgactttgctgacagtccgatgtctggt
gaggatttctcttgctttggtaactctaatcctttctcctctttggtgtcggagattgaa
gaggattctactagtaaatccaaaattgctagaagattgtcatttactaaagacagtcac
actgttttcccatatgtttctgagatcaacattggttcagatatgttgagttctgtaaca
tgtcctagacaaggtcttgtaggaactagtcctaattctgatgcaagtcccagcaaccaa
gaaaactccatacgggatgttttagctcagcgatctgcagcttgcaaaggatcactacta
aaaaacgatgtatcaaatcatagtgcaacatcactctcaagggccattctttcaaaccaa
ccacaattagattcaccttggacgatagaatttcttaacaggatcagggagaagagcaga
ttacgtcagcagaatcttccttctgatacatctgcttcaccctttggcagatcaggaaat
atagcaaaagttcctaagagaagaagtccatcaattcttgagtttttcaaataccaagga
ggcaacactcctaagaaaatactagaacaaaggaagcagaaaagacctccacaagcatcc
agctcatctaagaataaaaagacttcatcctcccttacacaaacatcgacacccactgat
aagagaacaagacagactctatcttttgaaatgaatggaagtggaagtcaaactaagcta
gtttggagagacggaggagcacatggtttgagcaaaaaggttcgctattaa
DBGET
integrated database retrieval system
