Gossypium hirsutum (upland cotton): 107936990
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Entry
107936990 CDS
T04793
Name
(RefSeq) WD-40 repeat-containing protein MSI3
KO
K10752
histone-binding protein RBBP4
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03082
ATP-dependent chromatin remodeling
ghi03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
107936990
03083 Polycomb repressive complex
107936990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ghi03036
]
107936990
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
107936990
Histone modification proteins
HAT complexes
HATB complex
107936990
HDAC complexes
Sin3A-HDAC complex
107936990
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
107936990
PRC2.2
107936990
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
107936990
Heterochromatin formation proteins
Other heterochromatin formation proteins
107936990
Chromatin remodeling factors
NuRD complex
107936990
NuRF complex
107936990
NuRF complex (fruit fly)
107936990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
CAF1C_H4-bd
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_EML_2
WDR55
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
EIF3I
WD_LRWD1
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_WDR19_1st
Beta-prop_SCAP
Beta-prop_HPS5
Beta-prop_WDR90_POC16_2nd
WD40_RFWD3
ANAPC4_WD40
Beta-prop_SPT8
MIOS_WD40
Beta-prop_RIG_1st
DUF6922
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_NUP159_NUP214
Motif
Other DBs
NCBI-GeneID:
107936990
NCBI-ProteinID:
XP_016725289
UniProt:
A0A1U8MIA5
LinkDB
All DBs
Position
A01:179131..181703
Genome browser
AA seq
410 aa
AA seq
DB search
MAGDSEMNPEQVEEEFSVWKKNTPFLYDLVISHPLEWPSLTVHWVPSSPTPYGSDPTFNV
HKLVLGTHTSGGAPDFLMIADGVLPTLASESNIAAKNDDPVIPKVEITQKMRVDGEVNRA
RCMPQNPVIIGAKTSGSDVFVFDYAKQAAAKEQEGDCVADLRLRGHEKEGYGLSWSPFKE
GYLLSGSQDHKICLWDLSSWPQDKVLDATHVYEAHESVVEDVSWHLKNENIFGSSGDDCM
LMIWDLRTNQTEQRVKAHDREINYLSFNPYNEWVLATASSDSTVGLFDVRKLTVPLHVLS
SHSGEVFQVEWDPNHETVLASSGDDRRLMIWDLNRIGEEQLEIELDADDGPPELLFSHGG
HKAKISDFSWNKNEPWVISSVAEDNTLQVWQLAESIYRDEDDTQTAEDHP
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcgattcagagatgaacccagagcaggtagaagaagagttcagcgtatggaag
aagaacacccctttcctctatgatctcgtcatttctcaccctctcgaatggccttctttg
actgtccattgggttccttcttctcccactccttacggatctgaccctacttttaacgtt
cacaaactcgtcctcggaactcacaccagcggcggcgcccccgattttctaatgatagcc
gacggagttctccccactctcgcctctgaatccaatatcgctgctaaaaatgatgaccca
gttatccctaaggttgagataacacagaaaatgcgtgttgatggggaagtcaacagggct
agatgtatgcctcaaaacccggttattatcggcgcaaagaccagtggctccgacgttttc
gtgtttgattatgccaagcaggctgcagctaaagagcaggagggtgactgtgttgctgat
ttgaggttgaggggtcatgaaaaggaagggtatggattatcatggagtccatttaaggag
ggttatcttttgagtggttcacaagaccataagatatgcctttgggacttgtcttcttgg
cctcaagataaggttcttgatgcaacccatgtttatgaggcccatgagagtgtggttgaa
gatgtgtcatggcatttgaagaatgagaatatatttggttcttctggtgatgattgtatg
ttaatgatctgggacttgcgcactaaccaaactgaacaacgtgttaaagctcacgacaga
gagatcaattatttgtcattcaatccttataatgagtgggttctggctacagcatcgtcc
gactccaccgtaggtttgtttgatgtacgaaagctgactgtacctttgcatgttttaagc
agccacagtggagaggtctttcaggtagaatgggatcctaatcacgagacggtgctggca
tcttctggtgatgataggaggttgatgatttgggaccttaacaggattggagaagagcaa
ttagaaatcgaattagatgccgatgatggccctcctgaacttctcttttctcatggaggc
cataaagctaagatttcagatttctcgtggaacaaaaatgagccatgggtgatttctagt
gtagctgaagacaacacacttcaagtgtggcaattggcagagagtatatatcgagacgag
gatgacactcaaactgccgaagaccatccatag
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