KEGG   Gossypium hirsutum (upland cotton): 107937242
Entry
107937242         CDS       T04793                                 
Name
(RefSeq) WD-40 repeat-containing protein MSI4
  KO
K10752  histone-binding protein RBBP4
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03082  ATP-dependent chromatin remodeling
ghi03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    107937242
   03083 Polycomb repressive complex
    107937242
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ghi03036]
    107937242
Chromosome and associated proteins [BR:ghi03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    CAF-1
     107937242
  Histone modification proteins
   HAT complexes
    HATB complex
     107937242
   HDAC complexes
    Sin3A-HDAC complex
     107937242
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     107937242
    PRC2.2
     107937242
  Centromeric chromatin formation proteins
   Kinetochore proteins
    MIS16-MIS18 complex
     107937242
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    107937242
  Chromatin remodeling factors
   NuRD complex
    107937242
   NuRF complex
    107937242
   NuRF complex (fruit fly)
    107937242
SSDB
Motif
Pfam: WD40 CAF1C_H4-bd WD40_Prp19 WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_EIPR1 WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd Beta-prop_RIG_2nd Beta-prop_EML WDR55 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_SPT8 EIF3I Beta-prop_IFT122_1st Beta-prop_WDR75_1st WDR90_beta-prop_4th ANAPC4_WD40 WD40_RFWD3 Beta-prop_WDR19_1st Beta-prop_NUP159_NUP214
Other DBs
NCBI-GeneID: 107937242
NCBI-ProteinID: XP_016725582
UniProt: A0A1U8MFG1
LinkDB
Position
D06:64844774..64851508
AA seq 462 aa
MKGEKGRSVEEKYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKTRQRLYLSE
QTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQ
NSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSRPDLILTGHQENAEFALAMCPTEPFV
LSGGKDKLVVLWSIHDHISTLAKEQGPTKSPGSTSTSTKHASKGGGGNDNHVEGPSVEAR
GIYQGHDDTVEDVQFCPSSAQEFCSVGDDSCLILWDARAGSTPAIKVEKAHNADIHCVDW
NRHDINLILTGSADNTIHMFDRRNLSSGSPVHKLVGHSAAVLCVQWSPDKSSVFGSSAED
GILNIWDHEKIGKRQDTTGLKAPNAPPGLFFQHAGHRDKVVDFHWNTSDPWTIVSVSDDC
ESTNGGGTLQIWRMIDLIYRPVDEVLAELDKFKPHILACEKN
NT seq 1389 nt   +upstreamnt  +downstreamnt
atgaagggggagaaagggagatcggtggaagagaaatacactcaatggaagtctttagtc
cctgtcctctacgattggctcgctaatcacaacctcgtttggccttctctctcttgccga
tgggggccgcaactagagcaagctacttacaagacccgtcagcgtctttacctttcagaa
cagactgatggaagtgttccaaacacacttgtaatagccaactgtgaggttgttaaacct
agggttgctgctgctgagcacatatctcagttcaatgaagaagcccgctctccctttgtg
aagaaatataaaactattatacatcctggagaggtgaacagaatcagagaactcccacag
aacagcaagatagttgcgacacatactgacagtcctgatgtcctcatttgggatgtagag
gcccagcctaatcgccatgctgtgctgggagctgcagattctcgtccagatctgatattg
actggacatcaagaaaatgctgaatttgctcttgctatgtgtccaactgaaccttttgtc
ctatctggaggcaaggacaagttagtggttttgtggagcattcatgatcatatctctact
ctggcaaaggagcaagggcccacaaagtctccaggatctactagtaccagtacaaaacat
gcctctaagggtggtgggggtaacgataaccatgttgagggcccttccgtcgaggcacga
ggtatctaccaaggccatgacgatacagttgaagatgttcagttctgcccatcaagtgct
caggaattctgcagtgttggagatgattcttgtcttatattatgggatgctagagctggc
tcaactccagctatcaaggttgagaaagctcataatgctgatattcattgcgtcgattgg
aatcgtcatgacataaatctcattttgactgggtctgctgataataccattcacatgttt
gaccgccgaaacctttcctctggctccccagttcataaactcgtgggccacagtgctgct
gtcctttgtgtacagtggtccccagacaagtcatcagtctttggaagttctgccgaggat
gggatcttaaacatctgggaccatgaaaagattgggaaaaggcaagatactactggattg
aaggcaccaaatgctcctcctggattgttctttcaacatgcagggcatagggacaaggtt
gtggacttccattggaatacatctgatccgtggacaattgtcagtgtgtcagatgattgc
gaaagcactaatggtggtggtactctacagatatggcggatgatcgatttgatttaccgt
ccggtagacgaagtcttagccgagctagataagtttaaacctcacattctagcatgtgaa
aaaaattag

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