Gossypium hirsutum (upland cotton): 107937282
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Entry
107937282 CDS
T04793
Name
(RefSeq) nuclear pore complex protein NUP98A-like isoform X1
KO
K18716
nucleoporin NUP42
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107937282
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
107937282
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup98_GLEBS
Motif
Other DBs
NCBI-GeneID:
107937282
NCBI-ProteinID:
XP_040963472
LinkDB
All DBs
Position
D12:60066682..60072925
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AA seq
1217 aa
AA seq
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MFGATSQKVHPDNALFCAHLHPSLFLGRPTMQVAISLHLNLPLVVQPSFASQTGSSIFGG
SSTEAFGTAQSSSPFLSTTAFGASSSPAFGSSVPAFGSSSSPAFGSSSASFGGSSVFGQK
PAFGFGSTPTQSSPFGITACIWFPDTISQSAFGSSTSAFGAASTPAFGVTSTPAFGSTGS
SAFGSTGTAFGVSNSPVFGTVGTFGASSAPAFGTSLTHAFGASNSAFGTSKTPVFGVSNS
AFGFSDTPTFGSSSTPSFSSGSSPAFGQSTPAFASSPFGTTTIGAQSSFGPQSSAPAFGQ
STFGAQRGGRRVASYTPTIDADSSIGTQMFESISAMPVYKDKSHEELRWEDYQLGDKVGL
QPTAQPSGEICSGVSTAPTSPCGSSPTFGQTSVNPHSITSTNPFGVSNSPVFGTVGTFGA
SSAPAFGTSLTHAFGASNSAFGTSKTPVFGVSNSAFGFSDTPTFGSSSTPSFSSGSSPAF
GQSTPAFASSPFGTTTIGAQSSFGPQSSAPAFGQSTFGAQRGGRRVASYTPTIDADSSIG
TQMFESISAMPVYKDKSHEELRWEDYQLGDKVGLQPTAQPSGEICSGVSTAPTSPCGSSP
TFGQTSVNPHSITSTNPFGVSNSPVFGTVGTFEASSAPAFGTSLTHAVGASNSAFGTSKT
PVFGVSNSAFGVSDTPTFGSSSTPSFSSGSSPAFGQSTPAFASSPFGTTTIGAQSSFGPR
SSAPAFGQSTFGAQRGGRRVASYTPTIDADSSIGTQMFESISAMPVYKDKSHEELRWEDY
QLGDKVGLQPTAQPSGEICSGVSTAPTSPCGSSPTFGQTSVNPHSITSTNPFGVSNSPVF
GTVGTFGASSAPAFGTSLTHAFGASNSAFGTSKTPVFGVSNSAFGFSDTPTFGSSSTPSF
SSGSSPAFGQSTPAFASSPFGTTTIGAQSSFGPRSSAPAFGQSTFGAQRGGRRVASYTPT
IDADSSIGTQMFESISAMPVYKDKSYEELRWEDYQLGDKVGLQPTAQPSGEICSGVSTAP
TSPCGSSPTFGQTSVNPHSITSTNPFSLKSPSFSSVGFATSTTTSNPSQSTSSSLFDPIS
STTLISISSLTPTFGTGSSLFSSSVTPPFPSSPSIFGTAAVPATTPAFATGLNFSSSQAS
PLFNSTPAIGQVTSTFGQSTGSFDQTSILNTSSTGFCGNMFSSPLLLAPANNPAAFGLAT
ASRSGNLYYHSSFLSYL
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgtttggtgcaactagccaaaaagtgcatcctgataatgctttgttctgtgcccatttg
catcccagtctgtttttggggagaccaacaatgcaagtagcaatcagtttgcacctaaac
cttcctttagtagtccaaccctcttttgcttcccaaacagggagttcaatatttgggggt
tcttctactgaagcgtttggtacagcccagtcttcttctccctttttgtcaaccacagcc
ttcggtgcctcttcatctccggcttttggaagttctgtgcctgcttttggatcttcttct
tctcctgcttttggcagttcatcagcatcttttggtggatcttctgtttttggtcagaag
ccggcatttggctttgggtctactcccactcaatcaagtccttttggaatcacagcctgc
atttggttccccgataccatttcccagtctgcattcggttccagtacttctgccttcggt
gctgcaagcactcctgctttcggtgtcacaagcactcctgccttcggttcaactggaagt
tcagcatttgggagcactggaactgcatttggtgtgtcaaattccccggtatttggaaca
gtaggcacatttggagcatcaagcgcaccagcttttggcacttctctcactcatgctttt
ggagcatcaaattctgcttttggcacttccaagactcctgtttttggagtgtcaaattct
gcttttggcttttccgacactcctacttttggatcatcttctactccttcattcagctct
gggtctagccctgcttttggccaatcaacaccagcatttgccagtagtccttttggaaca
actacaattggagcacagagttcttttggaccccaatcttctgcaccagcatttggacag
tcaacttttggggctcaacgtgggggaagaagagttgcttcttacacgcctacaattgac
gctgatagtagcattggtacacagatgttcgagtcaatttcagctatgcctgtttacaaa
gataaaagtcatgaggagctgagatgggaggattatcaattaggagataaagttggactg
cagccaaccgctcagccttctggagagatttgctctggtgtgtcaactgcacctacaagt
ccttgtggctcttctccaacatttggccaaacatctgtaaatcctcattccatcacaagt
accaatccatttggtgtatctaattccccggtatttggaacagtaggcacatttggagca
tcaagcgcaccagcttttggcacttctctcactcatgcttttggagcatcaaattctgct
tttggcacttccaagactcctgtttttggagtgtcaaattctgcttttggcttttccgac
actcccacttttggatcatcttctactccttcattcagctctgggtctagccctgctttt
ggccaatcaacaccagcatttgccagtagtccttttggaacaactacaattggagcacag
agttcttttggaccccaatcttctgcaccagcatttggacagtcaacttttggggctcaa
cgtgggggaagaagagttgcttcttacacacctacaattgacgctgatagtagcattggt
acacagatgttcgagtcaatttcagctatgcctgtttacaaagataaaagtcatgaggag
ctgagatgggaggattatcaattaggagataaagttggactgcagccaaccgctcagcct
tctggagagatttgctctggtgtgtcaactgcacctacaagtccttgtggctcttctcca
acatttggccaaacatctgtaaatcctcattccatcacaagtaccaatccatttggtgta
tctaattccccggtatttggaacagtaggcacatttgaagcatcaagcgcaccagctttt
ggcacttctctcactcatgctgttggagcatcaaattctgcttttggcacttccaagact
cctgtttttggagtgtcaaattctgcttttggcgtttccgacactcctacttttggatca
tcttctactccttcattcagctctgggtctagccctgcttttggccaatcaacaccagca
tttgccagtagtccttttggaacaactacaattggagcacagagttcttttggaccccga
tcttctgcaccagcatttggacagtcaacttttggggctcaacgtgggggaagaagagtt
gcttcttacacgcctacaattgacgctgatagtagcattggtacacagatgtttgagtca
atttcagctatgcctgtttacaaagataaaagtcatgaggagctgagatgggaggattat
caattaggagataaagttggattgcagccaaccgctcagccttctggagagatttgctct
ggtgtgtcaactgcacctacaagtccttgtggttcttctccaacatttggccaaacatct
gtaaatcctcattccatcacaagtaccaatccatttggtgtgtctaattccccggtattt
ggaacagtaggcacatttggagcatcaagcgcaccagcttttggcacttctctcactcat
gcttttggagcatcaaattctgcttttggcacttccaagactcctgtttttggagtgtca
aattctgcttttggcttttccgacactcctacttttggatcatcttctactccttcattc
agctctgggtctagccctgcttttggccaatcaacaccagcatttgccagtagtcctttt
ggaacaactacaattggagcacagagttcttttggaccccgatcttctgcaccagcattt
ggacagtcaacttttggggctcaacgtgggggaagaagagttgcttcttacacgcctaca
attgacgctgatagtagcattggtacacagatgttcgagtcaatttcagctatgcctgtt
tacaaagataaaagttatgaggagctgagatgggaggattatcaattaggagataaagtt
ggactgcagccaaccgctcagccttctggagagatttgctctggtgtgtcaactgcacct
acaagtccttgtggttcttctccaacatttggccaaacatctgtaaatcctcattccatc
acaagtaccaatccatttagtctaaaatctccatccttcagcagtgtaggctttgcaacc
tcgactactacctcaaacccttcccaatcaacatcatcaagcctttttgacccaatttcc
tcaacaactctaatatctatttcatctttgactcctacatttggaactggttcatctctt
tttagttcatctgtcacgcctccatttccatcttcaccatccatttttggtactgctgca
gttcctgcaacaactccagcatttgctaccggtttaaattttagcagcagccaagcatcc
cctttgttcaattctacccctgcaattgggcaggtgacctctacatttggacagagtact
ggtagctttgaccaaacaagcattttaaacacatcttcaactgggttttgtgggaatatg
ttttctagccctctactgttggctccagctaacaacccagctgcctttggcctggcaact
gcaagtcgctctggaaatctttactatcattcttcctttttatcatacttatga
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integrated database retrieval system
