Gossypium hirsutum (upland cotton): 107937429
Help
Entry
107937429 CDS
T04793
Name
(RefSeq) polygalacturonase QRT2-like isoform X1
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi00040
Pentose and glucuronate interconversions
ghi01100
Metabolic pathways
Module
ghi_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
107937429
Enzymes [BR:
ghi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
107937429
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Motif
Other DBs
NCBI-GeneID:
107937429
NCBI-ProteinID:
XP_040955461
LinkDB
All DBs
Position
D08:3278916..3294733
Genome browser
AA seq
459 aa
AA seq
DB search
MTKHVQVIAPFDICLIMWLKTLCVPLFITFICLSTSCFGSYREDPFHSDVRQTHVYSRPT
TYNKQDNVNPINNNEVWSRIDRVTLKVINVDDFGAKANGFDDSQAFKEAWELACNSSQGA
IVVVPKNKIYHLKPIDFFGPCNSPLIVNIHGTIKATVHHSDYKAHGRRRWLYFANVQNLR
VEGGGIINGNGRTWWQKSCKINIAIPCKEAPTALTFSQCSNLRVAGLRIRNAQQMHLSFN
KCVNVKALNLSVTAPGNSPNTDGIHVSETHNIHIKNCVIKTGDDCISVVSGSQNVRATDI
TCGPGHGISIGSLGARNSAAYVSNVIVNRATISGTTNGVRIKTWQGGSGYAKNIKFQNIM
VHNVSNPIIIDQNYCDHHKSPCPCKVSAVQVSNVIYENIRGTSASNVAVKFNCSRRFPCR
EIFLQNVAITSSKEDKEHTAEASCTNIRLSYRGNVFPPC
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgactaaacatgttcaagtgatagctcctttcgacatttgtctgataatgtggttaaaa
accctttgtgtcccacttttcattacattcatctgtttgtccacatcttgttttgggagt
tacagagaggacccatttcacagtgatgttcgacaaactcatgtttatagccgcccaaca
acctacaacaaacaagacaacgttaatcccatcaacaataatgaagtttggtcgaggatt
gatagggtcactctcaaggtaatcaatgtcgatgattttggagctaaagctaatggattt
gacgattctcaggcatttaaggaagcttgggagttggcttgtaactcgtctcaaggagct
attgtggtggtccctaagaacaaaatttatcatcttaagccaattgatttctttggaccc
tgcaactctcctctcatagtgaatatccatggaacaattaaagccactgtccatcactcg
gattataaagcacacggaagacgacgatggctttactttgctaatgttcagaatttaagg
gtagaaggtggaggcatcatcaatggcaatggcagaacatggtggcaaaaatcttgcaaa
attaacatagccatcccttgcaaggaagcaccaactgcgctaacctttagccaatgcagt
aatctgagagtagcagggctgcggatccgaaatgctcaacaaatgcatctttcatttaac
aaatgtgtcaatgtaaaagctctcaacctttccgttactgctcctggaaacagccccaac
acggatggaatccatgtgtctgaaacccacaacatacacattaagaactgtgtcatcaaa
actggtgatgattgtatctctgttgtgagcggctcgcaaaatgtacgagccacagatata
acttgtggaccgggacatggaatcagcattgggagcttaggagctagaaattctgcagct
tatgtatctaatgtaatagtgaatagagcaacaatttcaggtaccaccaatggggttaga
ataaagacttggcagggaggatcagggtatgccaaaaacatcaaatttcagaatataatg
gtgcataacgtgagcaatcctataatcatagatcaaaactactgtgatcatcataaatca
ccatgcccctgtaaggtatcagcagtgcaagtgagcaatgtgatttacgaaaacatcaga
ggaacaagtgcctccaatgttgccgtgaaattcaattgcagcaggaggtttccttgtcgg
gagatttttttgcaaaatgtagctataacatcatcaaaagaagataaagaacatactgca
gaagcttcatgcactaatattagattgtcttaccggggaaatgtttttccaccttgctga
DBGET
integrated database retrieval system
