Gossypium hirsutum (upland cotton): 107937597
Help
Entry
107937597 CDS
T04793
Name
(RefSeq) eukaryotic initiation factor 4A-3
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03013
Nucleocytoplasmic transport
ghi03015
mRNA surveillance pathway
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107937597
09122 Translation
03013 Nucleocytoplasmic transport
107937597
03015 mRNA surveillance pathway
107937597
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107937597
03041 Spliceosome [BR:
ghi03041
]
107937597
03009 Ribosome biogenesis [BR:
ghi03009
]
107937597
03012 Translation factors [BR:
ghi03012
]
107937597
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107937597
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
107937597
mRNA cycle factors
Stress granule specific factors
107937597
Spliceosome [BR:
ghi03041
]
Complex C
Other components
EJC/TREX
107937597
Ribosome biogenesis [BR:
ghi03009
]
Eukaryotic type
90S particles
Helicases
107937597
Translation factors [BR:
ghi03012
]
Eukaryotic type
Initiation factors
eIF-4
107937597
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Cas3-like_C_2
Helicase_RecD
AAA_22
Motif
Other DBs
NCBI-GeneID:
107937597
NCBI-ProteinID:
XP_016725995
UniProt:
A0A1U8MGT2
LinkDB
All DBs
Position
A12:complement(86537801..86541041)
Genome browser
AA seq
406 aa
AA seq
DB search
MAAAATTSRVARRMGADDDKLVFETTEGIEPILSFDQMGLKDDLLRGIYNYGFEKPSAIQ
QRAVMPIINGRDVIAQAQSGTGKTSMIALTVCQVVDTASREVQALILSPTRELASQTEKV
IRTIGDFMNIQAHACIGGKSVGEDIRKLENGVHVVSGTPGRVCDMIKRRTLRTRAIKLLI
LDESDEMLSRGFKDQIYDVYRHLPPELQVCLISATLPHEILEMTSKFMTDPIRILVKRDE
LTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRSNNFTVS
SMHGDMPQKERDVIMAEFRDGATRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRI
GRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atggctgcggcggcgacaaccagccgtgtggctcggcgtatgggtgccgacgatgataag
ttggttttcgagacgacggaaggaatcgagcccatactgagtttcgatcagatggggttg
aaggacgatctcctccgtggaatctataattacggcttcgaaaagccatctgccatacaa
cagagagcggtcatgcccataattaacggccgtgatgtcattgcgcaagcccagtctggt
accggcaaaacttccatgattgccctcaccgtttgccaagtggtcgacaccgctagcaga
gaggttcaagcattgatcttgtcacccacaagggaactggcatcacaaacagagaaagtg
atacggacaattggtgatttcatgaacatacaagcacacgcgtgtattggaggtaaaagt
gtcggtgaagatataaggaagctagaaaacggagttcatgttgtgtcgggaacacctggg
cgagtctgtgatatgataaagaggagaaccctacgtactagggctattaaactattgatt
cttgatgaatctgacgagatgttgagcagagggttcaaagatcaaatttatgatgtctac
aggcatcttccgccagagcttcaggtttgtttaatatctgctacactccctcatgagatc
ttggaaatgacgagtaaatttatgactgatcctataaggatccttgtgaagcgtgatgag
ttgactctggagggtattaaacaattttttgtggcagttgaaagagaggagtggaagttc
gatacactatgtgatctttatgatacattgaccatcacccaagctgtgattttctgcaat
acaaaacgaaaggttgattggctaactgagaagatgcgtagcaataacttcacagtatca
tcaatgcatggagatatgcctcagaaggaaagagatgtgattatggctgagtttcgtgat
ggtgcaacccgtgttcttatcacaacagatgtttgggccagggggctcgatgttcaacag
gtgtccctggtgataaattatgaccttccaaataatcgagagctttacatccacaggatt
ggtcgttcaggtcgctttggacgaaagggtgttgccattaactttgtaaaaagtgatgac
atcaagattctgcgagatatagagcagtattatagtacccagatagacgaaatgccaatg
aatgtggcggatctgatataa
DBGET
integrated database retrieval system
