Gossypium hirsutum (upland cotton): 107937609
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Entry
107937609 CDS
T04793
Name
(RefSeq) TATA-binding protein-associated factor BTAF1-like
KO
K15192
TATA-binding protein-associated factor [EC:5.6.2.-]
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
107937609
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
107937609
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3535
SNF2-rel_dom
HEAT
Helicase_C
HEAT_EF3_N
HEAT_2
HEAT_ECM29
TOR1L1_N
TPR_Trm732_C
CLASP_N
RIX1
Motif
Other DBs
NCBI-GeneID:
107937609
NCBI-ProteinID:
XP_016726016
UniProt:
A0A1U8MGP3
LinkDB
All DBs
Position
D13:complement(55507856..55527897)
Genome browser
AA seq
2054 aa
AA seq
DB search
MAQQQSSRLNRLLTLLDTGSTQATRFTAARQIGDIAKSHPQDLSSLLKKVSSYLHSKNWE
TRVAAAHAIGAIAQNVKHTSLADLFSSVGAKMTGAGISANVKDVVVSPELHSKIVSDVSF
RSFDINKVLEFGALLASGGQEYDIANDNLKNPKERLARQKQNLKRRLGLDMCEQFMDVGD
MIRDEDLVVHKYHQGNGLDNRFYTPPSVNNIQQFVSRMVPNVISKRRPSARELNMLKRKA
KINSKDQAKGWSDDGDTDLSPARNISTPRAACPDPLGSSKFDAVTDEDSSDHDGDGRWPF
HSFVEQLILDMFDPVWEIRHGSVMALREILTHHGGSAGVYLPDLNSDDALFLEVKDIEYP
IKIKREREIDLNMQVSPDELEPNLKKPKIEDEPFLVLDKVSSAGQHGGFDVAIKIEDSGW
TFPSGQFNGQHDISSMKMETEFYDNDVMYQSKEAVVVEEPKSYYEDKGAFANSDVLKDLP
ENCELINFVKLARHSWLKNCEFLQDCAVRFLCVLSLDRFGDYVSDQVVAPVRETCAQALG
ATFKYMHPSLVHETLNVLLQMQRRPEWEIRHGSLLGIKYLVAVRQEMLQDLLGYVLPACK
AGLEDPDDDVRAVAADALIPAADAIVALKGQSLHSIVMLLWDILLDLDDLSPSTSSVMNL
LAEIYSQEDMMPKMFGTPTAKEKQNFDLNEVVDVDEVGEAKDLQENPYMLSMLAPRLWPF
MRHSITSVRHSAIRTLERLLQAGYKRSISEPSGSSFWPSFILGDTLRIVFQNLLLESNEE
ILQCSERVWRLLVQCPVGDLEVAAASFMSSWIELATTSYGSTLDATKMFWPVALPRKSHH
KAAAKMKAVKLENESHGTTGLDSVRGAVSQENNGDTSSNLVKIIVGADAEMSVTNTRVIT
ASALGIFASKLQANSLQCVVDPLWNALTSLSGVQRQVASVVLISWFKEIKSRDSSGNQEI
IHSFPDHLRKWLLDLLACSDPAFPTKDSVLPYAELSRTFAKMRNEASQLLHAVESSGMFV
DILSTMKVNVESVTVDEAISFASKLLLLSNDNAENESMKRNIDDIESAKQRLIATSGYLK
CVQSNLHVTVTSLVAAAVVWMSELPARLNPIILPLMASIKREQEEILQQKAAEALAELIY
HCIARKPSPNDKLIKNICSLACSDPSETPQAAVINSMEIIDDQDFLSFGTSTGKPKSKVH
MLAGAEDRSKVEGFISRRGSELALRHLCEKFGPTLFEKLPKVWDCITEVLLPSSPSEDHQ
ILQAVESVKDPQILINNIQVVRFIAPVLDESLKPKLLMLLPCIFKCVSHSHVAVRLAASR
CIMTMAKSMTVNVMRAVIENAIPMLGDVTSVHARQGAGMLITLLVQGLSVELVPYAPLLV
VPLLRCMSDCDNSVRQSVTRSFAALVPLLPLARGLPPPVGLSEGLSRNAEDAKFLEQLLD
NSHIDDYKLFTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASEI
AEYRASNKDVDPPPSLIVCPSTLVGHWAFEIEKYIDASLISTLQYVGSVQDRVALREQFD
KHNVVITSYDVVRKDAEYLAQFPWNYCILDEGHIIKSAKSKITLAVKQLKAQHRLILSGT
PIQNNIMDLWSLFDFLMPGFLGTERQFQATYGKPLLAARDPKCSAKDAEAGALAMEALHK
QVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSPAQLLLYEQFSGSHVKQEISSMVKTDESG
VAGGAKQTSPKASTHVFQALQYLLKLCSHPLLVVGDKVPESLTSQLSELFPANSDVISEL
RKLHHSPKLVALQEILEECGIGVDTSASDGAVTVGQHRVLIFAQHKALLDIIEKDLFHTH
MKNVTYLRLDGSVEPEKRFDIVKAFNSDPTIDALLLTTHVGGLGLNLTSADTLIFMEHDW
NPMRDHQAMDRAHRLGQRKVVNVHRLIMRGTLEEKVMSLQRFKLSVANAVINAENASLKT
MNTDQLLDLFASAETSKKGATASKRSDSGIDGDPKLMGTGKGLKAILGGLEELWDQSQYT
EEYNLSQFLAKLNG
NT seq
6165 nt
NT seq
+upstream
nt +downstream
nt
atggctcagcaacaatcctcgcgtctcaatcgtttactcactctgttggacactggttca
acgcaagcgacgagattcactgcagcgcggcagattggtgatatcgccaaatcgcatccg
caggatttgagttctcttctcaagaaggtttcttcgtatcttcacagtaaaaattgggaa
acgagggttgctgctgcacatgccataggggctattgctcaaaatgttaagcacacttct
ctggctgatttattctcttctgttggagcaaagatgactggggctgggatatctgctaat
gtcaaagatgtggtggtatcacctgagttacattctaaaattgtatcagatgtttcattt
agaagctttgacatcaacaaggtgttggagtttggtgcgttattggcctcaggtggacag
gagtatgatattgcgaatgataacttaaagaatcctaaagagagattggctcgccagaaa
cagaatctaaaaagacgtctaggtttggatatgtgtgagcagttcatggatgtcggtgat
atgattagagatgaggaccttgtagttcacaaataccaccaaggaaatgggttagataat
agattttacacgccaccatctgtaaataacatccagcaatttgtttcacgtatggtacct
aatgttatttctaaaagaaggccaagtgccagggagttgaatatgttaaagcgaaaagct
aaaataaattcgaaagatcaagcaaaaggctggtctgatgatggagatacagatttatca
cctgctcgtaatatatcaactccaagagcagcatgtcctgatccattaggttcgagtaag
tttgatgctgttactgatgaagacagctctgatcatgatggggatggccgttggcctttc
catagttttgtcgagcaactcattcttgatatgtttgatcctgtttgggagattcgccat
ggtagtgttatggctttgagagaaattttaacacatcatggtggttctgccggagtatat
ttgcctgacttgaactcagatgatgcgctgtttcttgaagtaaaagatatagaatatcca
attaaaattaagagagagagagaaattgatttgaatatgcaagtttcaccagatgaattg
gagccaaatctgaagaagccaaagattgaagatgaaccatttctggtgttggacaaagtg
tcctctgcaggccagcatggtggctttgatgttgcaattaagattgaggatagtgggtgg
acctttccctcagggcagtttaatggtcaacatgatattagttctatgaagatggagact
gaattttatgacaatgatgtgatgtaccagtctaaagaagccgttgtagtggaagagcca
aaaagttactatgaagataagggtgcatttgcaaattcagatgtgttaaaagatctacct
gaaaattgcgaacttatcaactttgttaagctagccaggcattcctggcttaagaattgt
gaatttcttcaggactgtgcagttcgcttcttgtgtgtgctatcactagaccgtttcgga
gactacgtatctgatcaggttgttgctccagtacgagaaacttgtgcacaagcattaggt
gctacttttaagtacatgcacccttcattagttcatgaaacattgaatgtcttgctgcaa
atgcagcgtaggccagaatgggaaattcgtcatggaagccttttgggtatcaagtacttg
gttgctgttcgacaggagatgctgcaagatttgcttggctatgttcttcctgcttgtaaa
gctggattggaggaccctgatgatgatgtacgagctgtggctgcagatgctctgatacct
gctgcagatgctattgttgccttaaaaggtcaatcactgcattcaattgttatgctgctt
tgggatatactacttgatttggatgaccttagtccatccactagcagtgttatgaatctg
ttggctgaaatatactcccaagaagatatgatgcccaagatgtttgggacaccaacagct
aaagagaagcagaattttgatctaaatgaagtagttgatgttgatgaggttggagaagcg
aaagatttgcaggaaaatccgtatatgttgtctatgttagcaccacgattatggcccttc
atgaggcacagtattacatcagttcgacactcagccattcgtactttggagaggcttctt
caagctggatataaaaggagcatttctgagccttctggtagttccttttggccatctttt
attctgggtgataccctgaggattgtattccagaacctgctcctagaatccaatgaggaa
attcttcagtgttctgagagggtatggaggttgcttgtgcagtgcccagttggggacttg
gaagttgccgcagcatcctttatgtcatcttggattgaacttgcaactacttcttatggt
tcgacattagatgctacaaaaatgttttggccggttgctcttcctcgaaagagtcaccat
aaagcagcagctaaaatgaaagctgtgaagcttgagaatgaatctcatggaactactgga
ttggattctgtgagaggagctgtttctcaggaaaataatggggatacttcttccaactta
gtgaagataattgtcggtgctgatgcagaaatgtctgtgactaatactagagtcattact
gcttcagcattggggatatttgcatccaagttgcaggcaaattctttgcagtgtgtagtt
gatccactgtggaatgcacttacctccttgtctggagttcaaagacaggtggcatctgtg
gttcttatttcttggttcaaagagatcaaaagcagggattcatcaggaaaccaggaaatt
atacattcttttccagatcatcttagaaaatggttgttggatttgctagcatgttctgac
cctgcattccctactaaagattcggttctaccttatgctgagctgtcaaggacatttgct
aagatgcgcaatgaagctagtcaattactacatgctgttgaatcatctggcatgtttgtg
gatatattgtcaactatgaaagttaacgtagaaagtgtaactgtggatgaggcgatcagt
tttgcttcaaaattgttgttattatctaatgataatgctgagaatgaatcaatgaaaagg
aatattgatgatatagagtcagcaaaacaacgccttatagcaacttcaggctatttaaaa
tgcgttcagagtaatttgcatgttacagtgacctctttggttgctgctgctgttgtctgg
atgtcagagcttcctgcacgacttaatcctataattttgcctttaatggcctcaattaaa
agagaacaggaggaaatactgcaacagaaggcagcagaggcacttgctgaacttatttat
cattgcattgctcgcaagcccagcccaaatgataagttaataaagaatatttgtagtttg
gcgtgctcagatccatctgagactcctcaagctgcagttatcaattccatggagattatt
gatgaccaggatttcctctcctttggtactagtacgggaaaaccaaaatcaaaggttcac
atgctagctggtgctgaagatcgatcaaaagtggaaggttttatcagcagaagagggtca
gaactagcattgagacatttgtgtgagaagtttggtcctacattgtttgagaagcttccc
aaagtctgggattgcattactgaagttcttttgcctagcagtccttcagaagatcatcaa
attttgcaggctgttgaatctgtcaaagatcctcagatcttgattaataatatccaggtt
gtacgttttattgctccagtactggatgaatccttaaaacctaaactgcttatgcttctt
ccttgcatattcaaatgcgttagtcattcccatgtggcagttagattggccgcgtccagg
tgtattatgactatggccaagtctatgactgtaaatgtaatgcgggctgtgattgagaat
gccattccaatgttgggggatgtgacgtctgtccatgccaggcaaggtgccggcatgctt
attactttacttgttcaaggattgagtgtggagctggttccgtatgcacctttgttagtt
gtccctcttcttaggtgtatgagtgattgtgataattctgtcagacagagtgtgacacgc
agttttgctgccctggtgcctcttcttccattagcaagaggccttcctccacctgttgga
ctgagtgaaggtttatctagaaatgcagaagatgcaaaatttttggagcaactgcttgat
aattcccacattgatgattacaagctgttcactgaattgaaagtgacactgaggaggtat
caacaagaaggtataaactggttggcctttctaaaacgtttcaagcttcacgggatcttg
tgtgatgatatggggcttggaaagacgcttcaagcatcagcaattgtagcatctgagata
gctgagtatcgtgcttcaaataaggatgtggatcctcctccatccttaattgtttgtcca
tcaacccttgttggacactgggcttttgaaatagaaaaatacattgatgcttctctgata
tccactctccaatatgttggttctgttcaggatcgtgttgctttgagagaacagtttgat
aagcataatgtagttataacatcatatgatgtggtgcgcaaggatgctgagtatcttgca
caatttccctggaactactgtattttagatgaaggacatatcatcaaaagcgctaaatct
aaaataacattggcagtaaagcagctgaaagctcagcacaggttaatacttagtgggact
cccatccagaacaatatcatggatctgtggtccctttttgactttctaatgccaggattt
cttggaacagagagacagttccaagccacctacggaaagccactgctggctgctagagat
cctaaatgttctgcaaaggatgctgaagctggggcacttgctatggaagcattgcacaaa
caggtcatgcctttcctacttcgtcgaacaaaagatgaggttttgtcggacttgccagag
aaaatcattcaggacagatactgtgaccttagccctgcccaattattactttatgaacag
ttctctggttctcatgtgaaacaagaaatttcaagcatggtaaagacagatgagtctgga
gttgcaggaggagcaaagcagacttcaccaaaggcatctacacatgtatttcaggcactg
caatacttgctaaaactttgtagccatcccctgcttgtcgttggagacaaggttccagag
tcacttacatcgcagttgtcagagctttttccagcaaattcagatgtcatttctgaactt
cgtaaactccaccactctcccaaattagttgctcttcaggagattctggaagagtgtgga
attggtgtggatacttctgcttctgatggcgctgtcacagttgggcagcacagagttcta
atatttgctcaacataaagcgttactggatattattgaaaaggacttgtttcacacccac
atgaagaatgtcacatatctacgactggatggatcagttgaaccagaaaagcgttttgac
attgtgaaagctttcaattctgatccaactatagatgccctgcttcttacaacacacgtt
ggtggtcttggtctgaacttgacttctgctgataccctcattttcatggaacatgattgg
aatccaatgcgtgatcatcaggcaatggacagagcacatagattaggccaacggaaagtt
gttaatgtccaccgtctcatcatgcgtggtaccctggaagaaaaagttatgagcctccaa
cggttcaaactatcagttgccaatgctgttatcaatgccgagaatgccagtttgaaaacc
atgaacactgaccagttgctcgatctatttgcctctgccgaaacatctaaaaagggagct
actgcctcaaaacgttcagatagtggtatcgatggagacccgaaattaatgggtacaggg
aagggattaaaagccattcttggtggcttggaggagctttgggatcaatcacaatatact
gaggagtacaatttgagccagtttttagcaaaacttaatggctga
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integrated database retrieval system
