KEGG   Gossypium hirsutum (upland cotton): 107937695
Entry
107937695         CDS       T04793                                 
Name
(RefSeq) LOW QUALITY PROTEIN: DNA repair protein RAD5A-like
  KO
K15505  DNA repair protein RAD5 [EC:5.6.2.-]
Organism
ghi  Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ghi03400]
    107937695
DNA repair and recombination proteins [BR:ghi03400]
 Eukaryotic type
  TLS (translesion DNA synthesis) factors
   Rad6 epistasis group
    107937695
SSDB
Motif
Pfam: SNF2-rel_dom UBA_RAD5A Helicase_C HIRAN zf-C3HC4_3 zf-C3HC4 zf-RING_UBOX zf-C3HC4_2 zf-RING_2 DEAD zf-C3HC4_4 zf-RING_5 Prok-RING_4 RING_XB3-XBAT31 ResIII zf-RING_4 zf-ANAPC11
Other DBs
NCBI-GeneID: 107937695
NCBI-ProteinID: XP_040965582
UniProt: A0ABM3BEV5
LinkDB
Position
D13:complement(64103748..64112062)
AA seq 1037 aa
MGGNKVSEDLISTVRLIVGSDYSEMDIIRALHLAKHDATAAINIIFDSPRSFKPREKQIE
PESEPVVRISSSDTSTVSVKPKKTGKENKDCSFSSNGNVACGGSVLEDEGNVRLENDWWF
VGSSEVPGLSTSKGRKIKVGEEVSFTFPLKGTGSSPAGSMGKGFGKGRAAAACSEIVRFS
TKNFGEIGRIPNEWARCLLPLVRDKKIRVEGRCKSAPDVLGVMDTVLLSLSVYINSSTFH
KYQQTSLKAASNCNDESIVHPLPSLFRLLGLTPFKKAELAPGDLYTKKRPLETKDGSGIH
TPLLTANKFKNPSQNGNEVENDESISDADLENIVGVGDNSELEEMDPPSTLQCELRPYQK
QALQWMFQVEKGNCMDEAATTLHPCWEAYRLADKRDPVIYLNAFTGDATIEFPSTHQMAR
GGILADAMGLGKTIMTIXLLATHSERGGLSDSQSSDQPSDQGGEAIDVFGQSPNSVKTAT
KFPSFDKLSKQRNKLANGGNLIICPMTLLGQWKAEIETHVQPGSLSLYVHYGQSRPKDAK
LLAQNDVVITTYGVLASEFSAENSEDNGGLYSVRWFRIVLDEAHTIKSSKSQISMAAAAL
VADRRWCLTGTPIQNKLEDLYSLLRFLKVEPWGNWPWWNKLIQKPFEEGDQRGLKLVQSI
LKPIMLRRTKCSTDRYGKPILVLPPADVQVIYCELSEAEKDFYEALFKRSKVKFDQFVEQ
GRVLHNYASILELLLRLRQCCDHPFLVMSRGDTQEYTDLNKLAKRFLRGGQSTLDGEAKD
LPSRAYVQEVVEELRKGEQGECPICLEAFEDAVLTPCAHRLCRECLLASWRNPNSGLCPV
CRKTVTKQELITAPTESRFQVDVEKNWVESTKVVVLLQELENLRSSGSKSILFSQWTAFL
DLLQIPLSRNNIPFLRLDGTLNQQQREKVIKQFSEDGKIMVLLMSLKAGGVGINLTAASN
AFVLDPWWNPAVEEQAVMRIHRIGQTKRVAIKRFIVKGTVEERMEAVQARKQKMISGALT
DEEVRTARLEELKMLFT
NT seq 3114 nt   +upstreamnt  +downstreamnt
atgggtggaaacaaggtgtcggaggatctcatttccaccgtccgattgatcgttggatcg
gattattccgagatggacataattagagcgcttcacttggccaaacacgatgcgaccgct
gccatcaacataatttttgattcacctcgaagtttcaagcccagggagaaacaaattgaa
cccgaatccgaacccgtggtccgaatttcgagctccgatacatcaacggttagcgtaaag
cccaagaaaacagggaaagagaacaaggattgtagttttagtagtaatggaaatgttgca
tgtggtgggagtgttttggaagatgaaggaaatgttaggcttgaaaacgattggtggttt
gttggttccagcgaggtacctgggctttcgacgagtaaaggaaggaaaattaaggttggg
gaggaagttagcttcacgtttccgttgaagggtactggctctagtccggctggatcaatg
gggaaaggctttgggaaaggaagagcagctgcagcttgttcagagattgttagattctct
acaaagaactttggggagattggtagaatacccaatgaatgggcacgctgtctgttgccg
cttgtgagggataagaagattagagttgagggaaggtgtaaatcagctccggatgtgttg
ggtgtaatggatactgttctcttatcattaagtgtgtatattaatagttccacgttccat
aagtatcagcaaacttcactcaaggcagcaagcaattgcaatgatgaatctattgttcat
cctcttccaagtttgttccggttgcttggcctaacaccttttaagaaggcagaactagct
cctggtgatttgtacacaaagaaacgacctttggagacaaaggatggttctggtattcat
accccattattaactgcaaacaaatttaagaatccatctcaaaacggaaatgaggttgaa
aatgatgagtcaatctctgatgctgatcttgaaaatattgttggtgtgggagacaactct
gaattagaggagatggaccctcctagcaccctccagtgtgaacttcggccttatcaaaag
caggctctccagtggatgtttcaggtggagaagggaaattgcatggatgaggcagcaaca
acactgcacccttgctgggaagcatatcgcttagcagataagagagatcctgttatctac
ttgaatgcatttactggtgatgctacaatagaattcccaagcactcatcaaatggccaga
ggaggaatcttggcagatgctatggggcttgggaagaccatcatgactatantcctctta
gcaacccattcagaaagaggtgggctatcagatagtcaatcctcagatcagccttctgat
caaggtggtgaagccattgatgtattcggccaatcaccaaattctgtgaaaactgcaacg
aagtttcccagctttgataagttgtcaaagcaaaggaacaaacttgctaatggtggcaat
ctgattatatgtcccatgactcttcttggccaatggaaggcagagattgaaactcatgtg
cagcctggatctttgtctctatatgttcattatggtcaaagtcggccaaaggatgcaaaa
cttcttgcccagaatgatgttgtaatcactacatatggggttctagcttcagagttttca
gcagagaactctgaagataatggaggactgtactcggtgcgttggttcaggattgttctt
gatgaagcacataccataaaatcctcaaaaagtcaaatttccatggctgcagctgcttta
gttgctgatcgtcgctggtgtctcactgggactccgatccagaacaagctggaggatcta
tacagtctcctccgctttttgaaggtggaaccttggggaaactggccctggtggaacaag
ctcattcaaaaaccatttgaggaaggtgatcagagagggctaaagttggttcagtcaatc
ttaaagccaatcatgttaaggagaacaaaatgtagcacagaccgatatggcaagccgatt
ctagtgctacctccagccgatgttcaggtgatatactgtgagctcagtgaagctgaaaag
gacttctatgaagccctatttaaaagatcgaaggtgaagtttgatcagtttgttgaacaa
ggtcgtgttcttcataattatgcttctattttggagttacttctacgtctacgtcaatgt
tgtgatcatccgtttcttgtgatgagccgaggagatacacaagaatacacagatcttaat
aagctggctaaacggttccttagaggcgggcagagtactctagatggtgaagccaaggat
ctaccttcaagggcatatgtccaggaagtggttgaagagctgcggaagggagaacaagga
gagtgtccgatatgtcttgaagcatttgaagacgctgtactgactccatgtgctcaccgc
ttatgccgcgagtgtctcctggcaagttggcggaatccaaattctggtttatgccctgtt
tgtaggaaaactgttacgaagcaagaacttattacagccccaactgagagtcggtttcag
gttgatgttgagaaaaattgggtggagtccaccaaggtggttgttctattacaagaactt
gaaaatcttcgctcatcaggctctaagagcattctcttcagccagtggactgcatttttg
gacctcttgcagattcctctttctcggaataacattccgtttcttagactcgatgggact
ttgaatcaacagcaacgcgaaaaagtaataaaacagttttcagaagatggcaaaatcatg
gtgttgctaatgtcacttaaagctggtggggtcggaataaatctaactgcagcttccaat
gcctttgttttggatccttggtggaatccggctgtagaagaacaagctgtgatgcgcatt
catcgtattggccaaactaaaagggtagcaatcaaacggttcattgtcaagggaacagta
gaggaaaggatggaagcagtacaagcacgcaagcagaagatgatatctggtgccttaacc
gatgaagaagttcgaacagcacgtcttgaagaactcaaaatgcttttcacttaa

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