Gossypium hirsutum (upland cotton): 107937919
Help
Entry
107937919 CDS
T04793
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107937919
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107937919
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
107937919
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
MMR_HSR1
GTP_EFTU_D4
Zn_ribbon_RanBP
Motif
Other DBs
NCBI-GeneID:
107937919
NCBI-ProteinID:
XP_016726407
UniProt:
A0A1U8MLL6
LinkDB
All DBs
Position
A05:complement(6240152..6246242)
Genome browser
AA seq
775 aa
AA seq
DB search
MPRKVNYGIDYDDGYDDDYDDYDYGYDVEENVKEPSLQDTIKRGVWRCSVCTYDNDDTMS
SCDICGILRSPSVRNGTYDEKRTVHGICKVSGVSIMAKSLFASRPHQMSKKEVDSQQQND
DFVVKESNNFHMLGNNQGQFHEFHKAYSSPTHSRVNIAPFKFDVPSPDDLVSNGLHSSEQ
HAKAKIFDFKSSRAPSSRVGKNEAVKELSSAKRSDSSHDSTGKDKHNGIVFSKNLEINTS
SGFKASDKSSASMAKGRVEDSDGRSVSINMCSSGQSSSSLMPKERTDMVEDGSSLTHGGE
GHNLTSNLKNMTLAAKSGNSKDIKANSRAQYKPEKWMLPEKAEDSLTQLNLAIVGHVDSG
KSTLSGRLLHLLGRICQKEMHKYEKESKLQGKGSFAYAWALDESAEERERGVTMTVAVTY
LDSKRYHVVVLDSPGHKDFVPNMITGATQADAAILVIDASIGSFEAGMDGTKGQTREHAQ
LIRSFGVDQIIVAVNKMDAVEYSKDRFDLIKSQLGTFLRSCYFKDSSVIWIPLSAVENQN
LVVAPSDVRLSWYHGPYLLDAIDSFQPSSRDFSKPLLMPICDVIKSSQGQVSACGKLEAG
AVRSGSKVLVMPSADIAIVRSLERDSQTCSIARAGDNVAINLHGIDGNHVIAGGVLCHPD
FPVAFAKHLELKVLVLDGATPILMGSQLEFYAHHAKEAARVARISSLLDSKTGKVTKKAP
RCIVAKQSAVIELVLQEPVCIEMFSKCKALGRVFLRTLGRTVAVGVVTRIVEELV
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgaaaagttaattatggaattgattatgatgatggttatgatgatgattatgat
gactacgactatggatatgatgtagaagaaaatgtgaaagaaccttctctacaagacacc
atcaaacgtggtgtgtggcgttgctccgtttgtacttacgataatgatgataccatgtca
tcatgtgatatttgtggcattcttcgcagtccgtcagtcagaaacggcacctatgatgag
aagagaacagttcatggcatatgcaaagtttctggagtatctattatggccaagtctctt
ttcgcatcaaggccgcatcagatgtccaaaaaagaagtagattctcaacaacagaatgat
gattttgtggtgaaagagagcaataacttccacatgcttgggaataaccaaggacaattt
catgaatttcataaggcttatagttctcctacccattctcgtgttaatatagcccctttt
aagtttgatgttccatctccagatgacttggtctccaatggtctgcattcatctgaacag
catgcaaaagccaagatttttgactttaaatcttccagagctccctctagtagggttggg
aagaatgaggcagtcaaagaactatcaagtgctaaaaggtcagatagctcacatgactca
acaggaaaagacaagcacaatggaattgtcttctcaaagaatctagaaatcaacacatca
tcaggtttcaaagcttcagataaatcttctgcttcaatggcaaaaggcagagttgaagat
tcagatggaagaagtgtttctattaatatgtgttctagtggtcaaagctcatcatcactg
atgccaaaagaaagaactgatatggtggaagacggaagctctttaacgcatggaggtgag
ggacataatctcactagtaatctgaaaaacatgactttggctgctaaatctgggaactca
aaagatataaaagcaaattcacgtgcacagtataagcctgaaaagtggatgctccctgaa
aaagcagaagattcactgactcaactaaatcttgcaattgttgggcatgttgattctgga
aaatcaacactctctggtagactgcttcaccttttgggacgaatatgccaaaaagaaatg
cacaaatatgaaaaggagtccaaattgcagggaaaaggatcctttgcttatgcttgggca
ttggatgagagtgcggaagaaagggaaaggggagtcaccatgactgtggctgtaacttat
ttggattcaaaaagatatcatgttgttgtccttgactccccagggcacaaagattttgtt
ccaaatatgataactggggcaacacaagctgatgctgcaattcttgttatagatgcctct
attggttcatttgaagctggtatggatggcacaaagggacagacaagggaacatgcacaa
ctcatcagaagttttggtgtcgatcaaattatagttgcagttaacaagatggatgctgta
gagtactctaaggatcgatttgatttgataaaatcacagcttgggacatttctccgctct
tgttactttaaggattcctcagtcatatggattccgctaagtgctgttgagaatcagaat
ttagtagttgcaccttctgatgttcgtctatcctggtatcatggaccttatctattagat
gcaattgattccttccagccttctagtagagatttttcaaagcccctacttatgcctata
tgtgatgttataaaatcttcacaagggcaggtgtctgcctgtggcaagttagaggctgga
gctgttcgaagtggatcaaaggttttagtcatgccatctgcagatatagcaatcgtgcgt
tccttagagcgtgattcccaaacttgttcaattgcaagagccggagataatgtagctata
aacctgcacgggatagatggaaatcatgtgatagctggcggtgtgttatgtcatcctgat
tttccagttgcatttgcaaaacatttggagttgaaggtgcttgttctggatggtgcaaca
ccaattttaatgggttctcagttggagttttatgcgcaccatgcaaaagaagctgcaaga
gttgcaaggatatcatcgttgcttgattcaaagactgggaaagtcacaaagaaagcacct
cgttgtattgttgctaagcagagtgcagttattgagttggttttgcaggaaccagtttgc
attgaaatgttctcgaaatgtaaagccctcggaagggtgtttcttagaacattaggaaga
acagttgctgtgggggtcgtgacacgaatagttgaggagctggtatag
DBGET
integrated database retrieval system