KEGG   Gossypium hirsutum (upland cotton): 107937919
Entry
107937919         CDS       T04793                                 
Name
(RefSeq) HBS1-like protein isoform X1
  KO
K14416  elongation factor 1 alpha-like protein
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    107937919
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ghi03019]
    107937919
Messenger RNA biogenesis [BR:ghi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     107937919
SSDB
Motif
Pfam: GTP_EFTU GTP-eEF1A_C GTP_EFTU_D3 GTP_EFTU_D2 MMR_HSR1 GTP_EFTU_D4 Zn_ribbon_RanBP
Other DBs
NCBI-GeneID: 107937919
NCBI-ProteinID: XP_016726407
UniProt: A0A1U8MLL6
LinkDB
Position
A05:complement(6240152..6246242)
AA seq 775 aa
MPRKVNYGIDYDDGYDDDYDDYDYGYDVEENVKEPSLQDTIKRGVWRCSVCTYDNDDTMS
SCDICGILRSPSVRNGTYDEKRTVHGICKVSGVSIMAKSLFASRPHQMSKKEVDSQQQND
DFVVKESNNFHMLGNNQGQFHEFHKAYSSPTHSRVNIAPFKFDVPSPDDLVSNGLHSSEQ
HAKAKIFDFKSSRAPSSRVGKNEAVKELSSAKRSDSSHDSTGKDKHNGIVFSKNLEINTS
SGFKASDKSSASMAKGRVEDSDGRSVSINMCSSGQSSSSLMPKERTDMVEDGSSLTHGGE
GHNLTSNLKNMTLAAKSGNSKDIKANSRAQYKPEKWMLPEKAEDSLTQLNLAIVGHVDSG
KSTLSGRLLHLLGRICQKEMHKYEKESKLQGKGSFAYAWALDESAEERERGVTMTVAVTY
LDSKRYHVVVLDSPGHKDFVPNMITGATQADAAILVIDASIGSFEAGMDGTKGQTREHAQ
LIRSFGVDQIIVAVNKMDAVEYSKDRFDLIKSQLGTFLRSCYFKDSSVIWIPLSAVENQN
LVVAPSDVRLSWYHGPYLLDAIDSFQPSSRDFSKPLLMPICDVIKSSQGQVSACGKLEAG
AVRSGSKVLVMPSADIAIVRSLERDSQTCSIARAGDNVAINLHGIDGNHVIAGGVLCHPD
FPVAFAKHLELKVLVLDGATPILMGSQLEFYAHHAKEAARVARISSLLDSKTGKVTKKAP
RCIVAKQSAVIELVLQEPVCIEMFSKCKALGRVFLRTLGRTVAVGVVTRIVEELV
NT seq 2328 nt   +upstreamnt  +downstreamnt
atgcctcgaaaagttaattatggaattgattatgatgatggttatgatgatgattatgat
gactacgactatggatatgatgtagaagaaaatgtgaaagaaccttctctacaagacacc
atcaaacgtggtgtgtggcgttgctccgtttgtacttacgataatgatgataccatgtca
tcatgtgatatttgtggcattcttcgcagtccgtcagtcagaaacggcacctatgatgag
aagagaacagttcatggcatatgcaaagtttctggagtatctattatggccaagtctctt
ttcgcatcaaggccgcatcagatgtccaaaaaagaagtagattctcaacaacagaatgat
gattttgtggtgaaagagagcaataacttccacatgcttgggaataaccaaggacaattt
catgaatttcataaggcttatagttctcctacccattctcgtgttaatatagcccctttt
aagtttgatgttccatctccagatgacttggtctccaatggtctgcattcatctgaacag
catgcaaaagccaagatttttgactttaaatcttccagagctccctctagtagggttggg
aagaatgaggcagtcaaagaactatcaagtgctaaaaggtcagatagctcacatgactca
acaggaaaagacaagcacaatggaattgtcttctcaaagaatctagaaatcaacacatca
tcaggtttcaaagcttcagataaatcttctgcttcaatggcaaaaggcagagttgaagat
tcagatggaagaagtgtttctattaatatgtgttctagtggtcaaagctcatcatcactg
atgccaaaagaaagaactgatatggtggaagacggaagctctttaacgcatggaggtgag
ggacataatctcactagtaatctgaaaaacatgactttggctgctaaatctgggaactca
aaagatataaaagcaaattcacgtgcacagtataagcctgaaaagtggatgctccctgaa
aaagcagaagattcactgactcaactaaatcttgcaattgttgggcatgttgattctgga
aaatcaacactctctggtagactgcttcaccttttgggacgaatatgccaaaaagaaatg
cacaaatatgaaaaggagtccaaattgcagggaaaaggatcctttgcttatgcttgggca
ttggatgagagtgcggaagaaagggaaaggggagtcaccatgactgtggctgtaacttat
ttggattcaaaaagatatcatgttgttgtccttgactccccagggcacaaagattttgtt
ccaaatatgataactggggcaacacaagctgatgctgcaattcttgttatagatgcctct
attggttcatttgaagctggtatggatggcacaaagggacagacaagggaacatgcacaa
ctcatcagaagttttggtgtcgatcaaattatagttgcagttaacaagatggatgctgta
gagtactctaaggatcgatttgatttgataaaatcacagcttgggacatttctccgctct
tgttactttaaggattcctcagtcatatggattccgctaagtgctgttgagaatcagaat
ttagtagttgcaccttctgatgttcgtctatcctggtatcatggaccttatctattagat
gcaattgattccttccagccttctagtagagatttttcaaagcccctacttatgcctata
tgtgatgttataaaatcttcacaagggcaggtgtctgcctgtggcaagttagaggctgga
gctgttcgaagtggatcaaaggttttagtcatgccatctgcagatatagcaatcgtgcgt
tccttagagcgtgattcccaaacttgttcaattgcaagagccggagataatgtagctata
aacctgcacgggatagatggaaatcatgtgatagctggcggtgtgttatgtcatcctgat
tttccagttgcatttgcaaaacatttggagttgaaggtgcttgttctggatggtgcaaca
ccaattttaatgggttctcagttggagttttatgcgcaccatgcaaaagaagctgcaaga
gttgcaaggatatcatcgttgcttgattcaaagactgggaaagtcacaaagaaagcacct
cgttgtattgttgctaagcagagtgcagttattgagttggttttgcaggaaccagtttgc
attgaaatgttctcgaaatgtaaagccctcggaagggtgtttcttagaacattaggaaga
acagttgctgtgggggtcgtgacacgaatagttgaggagctggtatag

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