KEGG   Gossypium hirsutum (upland cotton): 107937951
Entry
107937951         CDS       T04793                                 
Name
(RefSeq) exosome complex exonuclease RRP46 homolog
  KO
K12590  exosome complex component RRP46
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    107937951
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ghi03019]
    107937951
Messenger RNA biogenesis [BR:ghi03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     107937951
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-GeneID: 107937951
NCBI-ProteinID: XP_016726457
UniProt: A0A1U8MI31
LinkDB
Position
D13:complement(59671636..59674012)
AA seq 242 aa
MEVDREDGRSQNQLRPLACSRNILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA
CIEVIWKPKTGQIGKPEKEYEMILKRTLESVCILTVNPNTTTSIIVQVVNDDGALLPSAI
NAACMALVDAGIPMKHLAVAICCCVAKSGYVILDPTKLEEQKMKAFAYLVFPNSVHSVLP
EGSLRVEGEPIENGIITSVTHGIMSVDDYFYCLERGRAASVKLSDFLRRNLQQQSTDSSK
AG
NT seq 729 nt   +upstreamnt  +downstreamnt
atggaggtcgatagggaggacggacgctcgcagaaccaattgagacctctcgcctgttct
cgcaacattctccatcgtgctcatggctctgccagttggtctcaaggagatacgaaagta
cttgctgctgtttatgggccgaaagctggaactaaaaagaatgagaaccctgagaaagct
tgcattgaagttatttggaagccaaaaacaggacaaatagggaaaccggaaaaggaatat
gagatgatattgaagaggaccctagagagtgtttgtattttgacagttaatcctaatact
acaacgtcaattatagtccaggttgtcaacgatgatggtgctcttctcccgagtgccata
aatgcggcatgtatggcccttgtagacgcagggattcctatgaagcatcttgctgtcgca
atatgttgttgtgtggccaagagtggatatgttatattggatcccaccaagctagaagag
cagaaaatgaaggcttttgcatatttagtcttcccaaactctgtccattcagtccttcct
gaaggatcactaagagtggaaggtgaacctattgaaaatgggattattacatctgtcact
catggtataatgtcagtggatgattatttttactgcttagaacgagggcgagctgcaagt
gtcaaattgtctgattttctcaggaggaacttgcaacagcagtcaactgattcatccaaa
gctgggtga

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