Gossypium hirsutum (upland cotton): 107938320
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Entry
107938320 CDS
T04793
Name
(RefSeq) pre-mRNA-processing protein 40A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107938320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ghi03041
]
107938320
Spliceosome [BR:
ghi03041
]
Complex A
U1 snRNP components
U1 related factors
107938320
Complex B
107938320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
Motif
Other DBs
NCBI-GeneID:
107938320
NCBI-ProteinID:
XP_016726915
UniProt:
A0A1U8MJF4
LinkDB
All DBs
Position
D06:complement(2515133..2525555)
Genome browser
AA seq
1026 aa
AA seq
DB search
MANNSQPSSAQPHWPPAVGSMGPQSYGSPLSSQFRPVVPTQQGQHFVPAASQQFRPVGQV
PSPNIGMPAVQNQQMQFSQPMQQFPPRPNQPGLSTPSQQPIQVQYGQTNRPLTSEPPQSH
QSAPPLNSHMPGVGVPGVPPSSYGFAPSSFGLPQNNVSAPSQFHPISQVHAPVAPVAGQP
WLSTGNQNVSLATPTQHTSQQPPPSSADTNANVPSLTPQSSDWQEHTSADGRRYYYNKRA
RQSSWEKPLELMTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQ
AGASQGTPSGSGVAPQALVATAVSAAETPTTAIPVSSNTLQDSSPVSVTPVANPSPTSVS
GPTTGPVAQSAAMSATGVQLPVVSVTPVPAVPSRGSTVSAPSVGANTAVTRSSETTATQD
TMHFADGASAQDIEEAKKGMTTAGKVNMTPVEEKVPDDEPLVYANKLEAKNAFKSLLESA
NVQSDWTWEQTMREIINDKRYGALKTLGERKQAFNEYLGQRKKLEAEERRMRQKKAREEF
TKMLEESKELTSSMRWSKAQSLFENDERFKAVERARDREDLFENYIVDLERKEREYAAEE
KRRNIAEYRKFLESCDFIKANSQWRKVQDRLEDDERCSRLEKIDRLLIFQDYIHDLEKEE
EEKKKMQKEQLRRAERKNRDAFRKLMEEHVADGTLTAKTYWRDYCLKVKELPQYLAVASN
TSGSTPKDLFEDVAEELDKQYHEHKTRIKEAMKTGKVTMVYSWTFEDFKAAISEDVGSSS
ISDINLKLVYDELLERAKEKEEKEAKKRQRLADDFTRLLHTYKEITASSDWEESKPLFEE
SQEYRSIAEESFRREIFEEYITHLQEKAKEKERKREEEKAKKEKDREEKDKRKEKEKERK
EKEREREREKGKDRSKKDETDSENLDISDSYGHKEEKKKEKEKDRKHRKRHAADDGSSDK
DDREESKKSRRHGSDRKKSRKHAHSPDSDSESRHRKHKRDHRDGSRRNSGYEELEDGELG
EDGEIQ
NT seq
3081 nt
NT seq
+upstream
nt +downstream
nt
atggctaacaattctcaaccctctagtgcccagccacattggcctcctgcagttggatcc
atgggtccccaaagttatggctctccgttatcttcacagtttcgaccagtggtcccaacg
cagcaagggcaacactttgttccagctgcttcccaacagtttcggcctgttgggcaggtt
ccttctccaaatattgggatgccagctgttcaaaatcagcagatgcagttttctcagcca
atgcagcagtttccaccccggccaaatcagcctggtctttctacaccttcacaacagcca
atacaggtacaatatggtcaaacaaacaggcctcttacatctgaaccacctcagtcacat
caatctgcacctcctttgaatagtcatatgcctggtgtaggagtccctggagtgccccct
tcatcatatggttttgcgccatcttctttcggcttgccacagaacaatgtcagtgcacca
tcgcagtttcaccctatatctcaagtgcatgcacctgttgccccagttgcagggcaacct
tggttgtcaactggaaatcagaatgtttcacttgctacaccaacacagcatactagccaa
caacctccaccttcttctgctgatacaaatgcaaatgttcctagccttactccgcaatct
tctgattggcaagagcatacatcagctgatggaagaagatactattacaacaaaagggca
aggcaatctagttgggaaaagcctctggaactgatgacaccaatagagagagctgatgca
tccactgtttggaaggaatttacaactccagagggaagaaagtattaccacaacaaggtt
acaaaggagtctaagtggacaatacctgaggagttgaagttagctcgtgagcaagctcaa
gcaggagctagccaaggaaccccatcaggttctggagtggctcctcaagctctagttgct
actgctgtctctgcagctgagacacctactacagctattcctgtgagctccaacactttg
caggattcaagcccagtttcagttacgcctgttgctaatccttcacctacttcagtatct
ggaccaacaacaggtcctgttgcacaatcagctgctatgagtgcaactggggttcaactc
cctgttgtgtctgtgacacctgtacctgcagtcccctccagaggttccactgtctctgct
ccttctgtcggtgctaacacagcagtcacaagaagctcggaaactacagcaactcaagac
actatgcattttgcagatggagcttctgctcaggacattgaggaagctaaaaaggggatg
acaacagctggaaaagttaatatgactccagtggaagagaaggttccagatgacgagcct
ttagtatatgcaaataagctggaggcaaaaaatgctttcaaatcactccttgaatctgca
aatgtgcaatctgattggacttgggagcagacaatgagagaaataattaatgacaaaagg
tatggtgctctgaagacacttggtgaacggaagcaagcctttaatgagtatttgggtcaa
agaaagaaattagaggctgaggaaaggcgcatgagacagaagaaagctcgagaagagttt
acaaagatgttggaagagtccaaggaactaacatcatcaatgagatggagcaaagctcaa
agtttgtttgaaaatgatgaacggtttaaggctgttgaacgagccagagatcgggaagat
ctctttgaaaactatatagtggatcttgagaggaaggaaagggaatatgctgcagaggaa
aaaaggcggaatatagcagaatacaggaaatttctggaatcctgtgattttattaaggca
aacagccagtggcggaaagttcaagatcgcttagaggatgatgaaagatgctcacgtctt
gaaaaaattgaccgcttgcttatattccaggactacattcatgacttggagaaggaagaa
gaggaaaaaaagaagatgcaaaaggaacaactgagacgtgctgagcgcaaaaaccgtgat
gcatttcgtaagctaatggaagaacacgttgccgatggcactcttacggctaaaacttat
tggcgagattattgtttgaaggtgaaagaattgcctcagtatcttgctgttgcatctaac
acatcaggttcaactccaaaagatttgtttgaggatgttgctgaagaattagacaaacag
tatcatgaacacaaaacccgcataaaagaagcaatgaagacagggaaggttactatggtt
tactcatggacatttgaagacttcaaggctgctatttctgaagatgttggttcctcatcg
atatcggatattaacttaaagcttgtgtatgatgagctgctcgagagagccaaggagaag
gaggagaaagaggctaaaaaacgtcaacgtctagccgatgatttcactagactattacat
acgtataaggagataaccgcttcttctgactgggaagaatcgaaaccactttttgaagaa
agccaagaatacagatcaattgcggaagaaagctttaggagagagatctttgaggaatac
attacacacttacaggagaaagctaaagaaaaggagcgtaaacgagaggaggaaaaggct
aaaaaggagaaagatagagaagagaaagataaacggaaagagaaggagaaggagagaaag
gagaaggaaagagaacgggagagggaaaaaggtaaagaccgaagtaaaaaagatgaaaca
gatagtgagaatttagatatatctgacagctacggccataaagaggagaagaaaaaggag
aaggaaaaagacaggaaacaccgtaaacgacatgctgctgatgatgggagttctgacaag
gatgatagagaggagtcaaagaagtctcgtagacatggtagcgaccgtaagaaatctaga
aagcatgctcactcacccgattctgacagtgaaagccgacatagaaaacacaagagagat
caccgtgatggctcacgccgaaacagtggttacgaggagctggaagatggcgaactcggt
gaggatggtgaaatccagtag
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