Gossypium hirsutum (upland cotton): 107938502
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Entry
107938502 CDS
T04793
Name
(RefSeq) DNA damage-binding protein 1a
KO
K10610
DNA damage-binding protein 1
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03420
Nucleotide excision repair
ghi04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
107938502
09124 Replication and repair
03420 Nucleotide excision repair
107938502
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ghi04121
]
107938502
03400 DNA repair and recombination proteins [BR:
ghi03400
]
107938502
Ubiquitin system [BR:
ghi04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
107938502
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
107938502
TCR (transcription coupled repair) factors
Cul4-CSA complex
107938502
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
Lgl_C
Motif
Other DBs
NCBI-GeneID:
107938502
NCBI-ProteinID:
XP_016727163
UniProt:
A0A1U8MNQ9
LinkDB
All DBs
Position
A03:complement(113544128..113552480)
Genome browser
AA seq
1088 aa
AA seq
DB search
MSTWNYVVTAHKPTNVTHSCVGNFTSPQELNLIVAKCTRIEIHLLTAQGLQPMLDVPIYG
RIATLELFRPHGEAQDFLFIATERYKFCVLQWDSETSELITRAMGDVSDRIGRPTDNGQI
GVIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCSKPTIVVL
YQDNKDARHVKTYEVALKEKDFVEGPWAQNNLDNGADLLIPVPPPLCGVLIVGEETIVYC
SANAFKAIPIRPSITKAYGRVDADGSRYLLGDHAGLLHLLVITHEKEKVTGLKIELLGET
SIASTISYLDNAVVFIGSSYGDSQLIKLNLQPDAKGSYVEVLERFVNLGPIVDFCVVDLE
RQGQGQVVTCSGAYKDGSLRVVRNGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVS
FISETRILAMNLEDELEETEIEGFNSQVQTLFCHDAVYNQLVQVTSSSVRLVSSTSRELR
NEWHAPSGYSVNVATANATQVLLATGGGHLVYLEIGDGTLTEVKHAQLEYEISCLDINPI
GENSNYSHLAAVGMWTDISVRIFSLPELNLITKEQLGGEIIPRSVLLCSFEGTSYLLCAL
GDGHLLNFQVNMSNGELTDRKKVSLGTQPITLRTFSSKNTTHVFASSDRPTVIYSSNKKL
LYSNVNLKEVGHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRTIPLGEHARRICH
QEQSRTFAICCLKNQSSADESEMHFIRLLDDQTLECISTYPLDTFEYGCSILSCSFSDDT
NVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAIYSLNAFNGKLLAAIN
QKIQLYKWMLREDGSREIQTECGHHGHILALYVKTRGDFIVVGDLMKSISLLIYKHEEGA
IEERARDYNANWMSAVEILDDDTYLGAENNFNLFTVRKNSEGATDEERGRLEVIGEYHLG
EFVNRFRHGSLVMRLPDSEVGQIQTVIFGTVNGAIGVIASLPHDQYVFLEKLQSNLRKVI
KGVGGLSHEQWRSFNNEKRTAEAKNFLDGDLIESFLDLSRGKMEEVSKGMGVSVEELSKR
VEELTRLH
NT seq
3267 nt
NT seq
+upstream
nt +downstream
nt
atgagtacgtggaactacgtcgtaaccgcacacaaacctaccaacgtcacccactcctgc
gtcggcaacttcaccagccctcaggagctcaatctcatcgttgcgaaatgtactcgtatt
gaaattcatttgcttactgctcaaggattacagcctatgttggacgtgccaatatacggg
agaattgcgactcttgaacttttccgtccacatggtgaagcacaggattttctgtttatt
gcaacagaaagatacaaattttgtgtccttcaatgggattccgagacatcagagcttatt
acaagagctatgggggatgtttcagatcgtattggtcgaccaacagacaatggacagatt
ggcgtaattgatcctgattgtaggttaattgggcttcatctatatgatgggttgtttaag
gttattccttttgataacaaagggcaacttaaagaagcatttaatataaggcttgaggaa
cttcaagtattggatatcaagtttctttatggttgctcaaagcctacaattgtagttcta
taccaggataataaagatgcgcgccatgttaaaacatatgaggtggctttaaaggagaag
gactttgttgagggaccatgggcgcaaaacaatcttgacaatggagccgatttgctcata
cctgtacccccacctctctgtggtgtccttattgttggggaagagacaattgtctattgc
agtgccaatgcattcaaagcaattccaatcagaccttcaattacaaaagcctatggaaga
gttgatgctgatggatcgaggtatttgcttggcgatcatgctggccttcttcacctgctt
gtcataacccatgagaaagagaaggtcactggactcaagatcgaactcttgggagaaaca
tctattgcatctacaatatcttatcttgataacgcagttgtctttattggttcaagttat
ggtgattcacagctgataaagctaaatctacaacctgatgcaaaaggttcttatgtggaa
gttttggaaaggtttgtcaatctggggcctattgttgacttttgtgtggtcgaccttgag
agacaagggcagggtcaagttgttacttgctctggagcttacaaagatggttctcttcgt
gtagttcggaatggaataggaattaatgaacaggcatcagtagaacttcaaggtatcaaa
ggaatgtggtcattgagatcctcaacggatgatccatttgacacctttctggttgttagt
tttatcagcgagacacgcattttggcaatgaatcttgaggatgagttggaagaaacagag
attgagggatttaattctcaagtgcagactttgttctgccatgatgctgtttacaatcag
cttgtacaggttacgtctagctctgtaaggcttgtgagttcaacatctagagagctacgc
aatgaatggcatgctccatctgggtattcggtcaatgttgccactgccaatgctacccag
gttttactagcaacaggagggggccatttggtttatttggaaattggtgatggcacatta
acagaagtcaaacatgctcagttggagtatgaaatctcatgtcttgacattaatccaatt
ggtgagaactctaactacagtcatctggctgctgttggaatgtggacggatataagtgtg
aggatattttcgctccctgaactgaatctcatcacaaaggagcaattgggaggagagatt
attcctagatctgttcttctttgctcttttgaagggacctcttacttgttatgcgccctt
ggtgacggtcatctcttgaattttcaagtgaacatgagtaatggtgaattaacagataga
aaaaaggtttctcttgggactcaacccataacgcttcgtactttctcctccaagaatacc
acccatgtatttgcctcttcagataggccaactgtcatttatagtagtaacaagaaatta
ctctatagcaatgtcaatttgaaggaagtcggtcacatgtgcccttttaactctgctgct
tttccagacagcctcgcaattgcaaaagaaggtgaacttactataggcacgattgatgat
attcagaagcttcatatccgcactatcccacttggggagcatgcacgtcgcatctgccat
caagaacagtctcggacctttgcaatatgttgtttgaaaaaccagtctagtgctgacgaa
tctgaaatgcattttattcgcctgttagatgatcaaaccttggaatgtatctcgacttac
cctcttgatacttttgagtatggttgctccattcttagctgttcattctcagatgacact
aatgtatattactgtgttgggactgcatatgttttgccagaagaaaatgagccaactaag
ggccgtatactggtttttattgttgaagatgggaagttacagcttattgctgaaaaggaa
actaagggagccatttactctttaaatgctttcaatggcaaactcctagctgctattaat
caaaaaattcaactatataagtggatgcttcgagaggatggctcccgtgaaatacaaact
gaatgtggacatcatggccacatacttgctctctacgtgaaaactcgtggggattttatt
gttgttggtgatttgatgaaatcaatttcattgttaatctacaagcatgaggaaggtgcg
atagaggaacgagcccgtgactacaatgcaaactggatgtcggcagttgaaattcttgat
gatgatacttatttaggtgctgaaaacaacttcaatctgttcactgttcggaagaacagt
gaaggtgccactgatgaggaacggggccgtcttgaggtgattggtgagtatcaccttggg
gaatttgtgaataggttccgtcatggttcccttgtgatgcggttgccagattcggaagtg
ggccagattcaaaccgttatttttggcaccgtcaatggtgcaattggcgtgattgcttca
cttccacatgatcagtatgtgtttctggagaagctgcaatcgaacttaaggaaggtgata
aagggcgtgggagggttgagccatgaacaatggaggtcattcaacaacgagaagagaact
gcagaagccaaaaactttttggacggagacttgatcgaatcattccttgatctgagccgt
gggaaaatggaggaagtttctaaaggaatgggagtttctgtggaggagctgtccaagaga
gtggaggaactgacgaggttgcattga
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integrated database retrieval system
