Gossypium hirsutum (upland cotton): 107938687
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Entry
107938687 CDS
T04793
Name
(RefSeq) RNA polymerase sigma factor sigA-like
KO
K03086
RNA polymerase primary sigma factor
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
107938687
Transcription machinery [BR:
ghi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
107938687
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Motif
Other DBs
NCBI-GeneID:
107938687
NCBI-ProteinID:
XP_016727402
UniProt:
A0A1U8MKP9
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Position
A08:124159779..124163805
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AA seq
499 aa
AA seq
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MMATAAIIGLTVGKRLLSSSFSYSDIIEKHSYAGDYGGAPHYQTAPTKSLIVAKKSSNCS
QSVPSYDRRSRSIKALKEHVDTASLVSTAGPWCRGSDDFEEESYELDYSVEALLLFQKSM
LEQQWTLSFERTVFTESPSRKTKKKVPVTCSGVSARQRRFNTRMQPNAKQLRSLISPELL
RSRLKGYVRGVVSEELLSHAEVVQLSKKIKTGLSLEDQRLRLKERLGCDPSDEQLATSLK
ISRAELRSMLIECSLARDKLAMSNVRLVMSIAQRYDNMGAEMPDLIQGGLIGLLRGIEKF
DSSKGYKISTYVYWWIRQGVSRALVDNSRTLRLPTHMHERLGLIRNAKYRLKEKGITPTI
DRIAESLNMSQKKVRNATEADSKVFSLDRVAFPSLNGLPGETHHSYIADHHEENNPWHGV
DEGALKDEVNRLIGITLGEREREIIKLYHGLGKESLTWEDISKRIGLSRERVRQIGLVAL
EKLKNAARKNGMEAMLLKQ
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atgatggcaacagctgctattatcggacttactgtcggaaagcgactcttgagttcttcg
ttttcgtattccgatatcattgagaagcactcgtatgctggtgattatggcggagctcca
cattatcaaactgctcccactaaaagtctaatagttgcaaagaaatcatctaattgtagc
caaagtgttccttcatatgatcggcgtagtcggtcgatcaaagctcttaaggagcatgtg
gatactgcttcccttgtttcaactgccggaccttggtgtcggggatccgatgattttgaa
gaagaaagctatgaacttgactactctgtggaggctcttcttttgtttcagaagtctatg
ctcgaacagcaatggactctttcgttcgaaaggacggtgttcactgaatcaccaagtaga
aaaactaaaaagaaggtacctgttacttgttctggggtgtcagctcggcaacggagattc
aatactaggatgcaacctaatgctaagcagctaagatcattgatcagtccggagctgctt
cgaagtcgtttgaagggttatgtgcgaggtgttgtaagtgaagagttgctcagccatgcg
gaagttgttcaattgtcgaagaaaatcaaaactggactttccttggaggatcagagattg
agattgaaggagaggctcgggtgtgacccgtccgatgaacagcttgcaacttccttgaag
atttctcgtgctgagttgcgttcaatgttaattgaatgttcattggcaagagacaaattg
gcaatgagcaatgtccgtttggttatgtccatagctcaaagatacgataacatgggtgct
gaaatgcctgatcttattcagggtggtttgattggactattgcgtggcatcgaaaaattc
gattcttcaaagggatataaaatttcaacttacgtttactggtggatacgtcagggtgta
tcgagagcattagttgataactcgagaactttaaggttgcctactcatatgcatgaacga
ctgggattaatccgaaatgcaaaatatagactcaaagagaaaggaataacgccaactatt
gataggattgccgagagtctgaacatgtctcagaagaaagtccggaatgcgacagaggca
gacagtaaggtcttctcacttgaccgcgttgcgttcccctcattgaatggtcttcctgga
gagactcatcatagttacattgcagatcaccatgaagaaaacaatccttggcatggagta
gatgaaggggcactcaaggatgaagtgaacagactcatcggtataacactgggagaacga
gaaagggagatcataaaactttatcatggtctcggtaaagaaagtcttacatgggaggac
atcagtaaacgcatcggtttgtcgagagagagagtccggcaaatcgggcttgtcgcgctg
gagaaactaaaaaacgcagcgaggaagaatggaatggaagctatgctattgaaacagtga
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