Gossypium hirsutum (upland cotton): 107939099
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Entry
107939099 CDS
T04793
Name
(RefSeq) SWI/SNF complex subunit SWI3A isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
107939099
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
107939099
03036 Chromosome and associated proteins [BR:
ghi03036
]
107939099
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
107939099
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
107939099
PBAF complex
107939099
GBAF(ncBAF) complex
107939099
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
107939099
NCBI-ProteinID:
XP_016727866
UniProt:
A0A1U8MM11
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All DBs
Position
A12:complement(100137603..100140751)
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AA seq
563 aa
AA seq
DB search
MENKPRHDPNPDSNRPEEPELDLYTIPSYSSWFAWNDIHETERQALKEFFEGSSISRTPK
IYKEYRDFIINKYREDPSRRLTFTEIRKSLIGDVTLLHKVFRFLETWGLINFLAPPPPHE
GSENDDRVRVENGAPNGVRVVATPNSLRPLSAPVVKGKNSGDGVEESGVKLPPLASYSDV
FGDLKRLHCGSCGDNCDSGYYEYKKDNFIVCDKCFKNGNYGEDKSMDDFELKDCHEKSAA
NGTVWTEAETLLLLDSVLKHGDDWDLVSQNVQTKSKLDCITKLIELPFGESLIDSAKGRG
NSSGTSMSMNGIKPVVVPSSEDQENIINEDQGYDGANENKKNGDSENQEPPLKKKRTAST
SDADSSLMKQIARISTMVGPQITAAAAEAAAAMLSDEMSCSREIFYGDHIDLTNGSLSPS
IYQQERAHNTEESEIKERSNPSDSIAESQETHPKKSDIPLPLRIRAAVATGLGAAAAHAK
LLAVQEEKEIEHLVATIIEAQIKKLNSKIKHCEDAELLMEKEYAAIEGLKEYILGERINI
LRTTYNTGTSKLLELQSQTSNLS
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atggagaacaagcctagacatgacccgaacccggattcaaatcgacccgaagaaccagag
ctcgacctctacaccataccgagctactccagttggtttgcttggaacgatattcacgaa
acagaaaggcaagcattgaaagaattcttcgaaggcagctcaatctcaagaacccctaaa
atctacaaggagtacagggatttcatcatcaacaaatacagggaagacccttctcgccgc
ctcactttcaccgaaatccgcaaatccctcatcggagacgtcactttactccacaaggtc
ttccgcttcttggaaacctggggtttgatcaacttcctcgccccgcctccaccccacgaa
ggttccgagaacgatgatagggttcgggtcgaaaacggggccccgaatggagtccgggtc
gtcgctactcctaattcgttgcggccgctttcggcgccggtcgttaagggtaagaacagt
ggtgatggggttgaagagagtggagtcaagttgcctcccctggcttcatattctgatgtt
tttggtgatttgaagagactacattgtggtagttgtggagataattgtgattctgggtac
tatgaatataaaaaggataatttcatagtttgcgataaatgcttcaaaaatggaaattat
ggcgaggataagtctatggatgatttcgagttgaaagattgccatgagaagagtgctgcc
aatggtactgtgtggaccgaagcggaaactcttcttcttttggattctgttctgaaacat
ggggatgactgggatcttgtttctcaaaatgttcaaaccaagtctaaacttgattgtatt
acgaagctcattgagctgccttttggggagtctttgatagattctgccaagggaaggggc
aattccagcggtacaagtatgagcatgaatggcataaaaccagttgttgttccttcatct
gaggatcaagagaatattataaacgaggatcaaggttatgatggtgcaaatgagaacaaa
aagaatggggattctgagaatcaagagcctcctttgaagaaaaaacgcactgcttccact
tcagatgctgatagttctctcatgaagcagattgctcgcatctctaccatggttgggcct
caaatcactgctgctgcagctgaagctgcagctgcgatgctttctgatgaaatgtcttgt
tcgagggaaattttttatggtgatcatattgatttaactaatgggtccctatctccttca
atttatcagcaagaaagagctcataatactgaagagtcagagataaaggagaggtctaat
ccatcagactctattgcagaatctcaagagacacatccgaagaagagcgacataccttta
ccattgcgaattagagcggcagttgcaacaggtcttggagcagcagctgctcatgccaaa
ttattagctgtgcaggaagagaaggagattgaacatttagttgcaaccataatcgaagca
caaataaagaaattgaactctaaaatcaagcattgtgaagatgcggagcttctaatggag
aaggaatatgctgcaatcgagggacttaaggagtatatccttggagagcggataaatatc
ttacgaacaacgtataatactggtacatctaaattgttagagttacaatcacaaaccagc
aacttaagttaa
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