Gossypium hirsutum (upland cotton): 107939223
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Entry
107939223 CDS
T04793
Name
(RefSeq) pinin
KO
K13114
pinin
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03013
Nucleocytoplasmic transport
ghi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107939223
03015 mRNA surveillance pathway
107939223
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107939223
03041 Spliceosome [BR:
ghi03041
]
107939223
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
107939223
Spliceosome [BR:
ghi03041
]
Complex C
Other components
EJC/TREX
107939223
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_memA
Motif
Other DBs
NCBI-GeneID:
107939223
NCBI-ProteinID:
XP_016728002
UniProt:
A0A1U8MR30
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Position
A01:94695..98136
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AA seq
412 aa
AA seq
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MGSTAVEKTAEELQREIDELHRQQREITERLRDPRGLRRGGLSGIGPRNFAANGSRQRGF
LRPADRIDGEDQPPAKRRLSSAVVKVEDGEIVDDEVAKDASDMAVEGSGAVHESDRKLST
QQQSGWSRRDVNQRPLKKDAEVPVAEHVPRILPKDDDPSLINRNKRMLGQLLGTLERFRK
EDKQLSGTEAYMRRSNSLQRAEQRAREESEKLRQQEREQIAEKRRRDLTLRARVAAKAEE
KKLELLFLQWSEHHKKLSNFIRTKTEPPIYYLPTKPLHEDAAIYEQQKEQEYLEWKTARR
EELSEYQKQIGEEYVGNVEKELERWQNARKARKVNNDMNLQETMDKELDSHRLEHGPKKR
KIPGGNNNEDEEDVEDINVGEDDMMDDVLDVDDNNGRRGDETAKAEPDVDQL
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atgggaagcaccgccgtcgagaagacagcagaagagcttcagcgagagattgatgagctt
catcgccagcaacgcgagattacagagaggctgagagatcctcgaggactccgaagagga
ggactgtcaggcatcggtcctcgtaacttcgccgccaatggttctcgtcagcgtggcttt
cttcgacctgcggataggattgatggagaagatcaacctccggctaagaggcgattgtca
tcagctgttgtcaaggttgaagatggagagattgttgatgatgaagtagcaaaggatgcc
agtgacatggctgtcgaaggatctggtgcagtacatgagagtgatagaaagctttcgact
cagcagcaaagtggttggtctagaagggatgtaaatcaaagaccactgaagaaggatgct
gaagttccggttgctgagcatgttccaaggattttgcccaaggatgacgacccaagcttg
attaataggaataaaagaatgttgggtcaacttttagggactttggagagattcaggaaa
gaagataagcaactttcagggacagaggcatatatgagacggtcaaattccttgcaaaga
gctgagcaaagagctcgcgaagaaagtgagaagctgaggcaacaagagcgtgaacaaata
gcagaaaagaggaggagagatctgactctcagggctcgtgtagctgccaaggctgaagaa
aagaagctggagttgttgtttcttcagtggagtgagcaccacaaaaagcttagcaatttt
ataaggacgaaaactgagcctccaatatattatttaccaactaaaccattgcatgaagat
gcagccatatatgagcagcagaaagaacaagagtatttggaatggaagacagcaaggagg
gaggaactgtctgaatatcagaaacagataggagaagaatatgtagggaacgtggaaaag
gagttggagaggtggcaaaatgctcggaaagctaggaaagtaaacaatgacatgaaccta
caagaaacaatggacaaagaattggatagccatagactggagcatggtccaaagaagaga
aagataccaggtggaaacaacaatgaagatgaggaagatgtggaagatatcaatgttggg
gaagatgatatgatggatgatgtgttggatgttgatgataataatggtaggaggggagat
gaaacagcgaaagcagagcccgatgttgatcagctttga
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