KEGG   Gossypium hirsutum (upland cotton): 107939223
Entry
107939223         CDS       T04793                                 
Name
(RefSeq) pinin
  KO
K13114  pinin
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03013  Nucleocytoplasmic transport
ghi03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    107939223
   03015 mRNA surveillance pathway
    107939223
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ghi03019]
    107939223
   03041 Spliceosome [BR:ghi03041]
    107939223
Messenger RNA biogenesis [BR:ghi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     107939223
Spliceosome [BR:ghi03041]
 Complex C
  Other components
   EJC/TREX
    107939223
SSDB
Motif
Pfam: Pinin_SDK_memA
Other DBs
NCBI-GeneID: 107939223
NCBI-ProteinID: XP_016728002
UniProt: A0A1U8MR30
LinkDB
Position
A01:94695..98136
AA seq 412 aa
MGSTAVEKTAEELQREIDELHRQQREITERLRDPRGLRRGGLSGIGPRNFAANGSRQRGF
LRPADRIDGEDQPPAKRRLSSAVVKVEDGEIVDDEVAKDASDMAVEGSGAVHESDRKLST
QQQSGWSRRDVNQRPLKKDAEVPVAEHVPRILPKDDDPSLINRNKRMLGQLLGTLERFRK
EDKQLSGTEAYMRRSNSLQRAEQRAREESEKLRQQEREQIAEKRRRDLTLRARVAAKAEE
KKLELLFLQWSEHHKKLSNFIRTKTEPPIYYLPTKPLHEDAAIYEQQKEQEYLEWKTARR
EELSEYQKQIGEEYVGNVEKELERWQNARKARKVNNDMNLQETMDKELDSHRLEHGPKKR
KIPGGNNNEDEEDVEDINVGEDDMMDDVLDVDDNNGRRGDETAKAEPDVDQL
NT seq 1239 nt   +upstreamnt  +downstreamnt
atgggaagcaccgccgtcgagaagacagcagaagagcttcagcgagagattgatgagctt
catcgccagcaacgcgagattacagagaggctgagagatcctcgaggactccgaagagga
ggactgtcaggcatcggtcctcgtaacttcgccgccaatggttctcgtcagcgtggcttt
cttcgacctgcggataggattgatggagaagatcaacctccggctaagaggcgattgtca
tcagctgttgtcaaggttgaagatggagagattgttgatgatgaagtagcaaaggatgcc
agtgacatggctgtcgaaggatctggtgcagtacatgagagtgatagaaagctttcgact
cagcagcaaagtggttggtctagaagggatgtaaatcaaagaccactgaagaaggatgct
gaagttccggttgctgagcatgttccaaggattttgcccaaggatgacgacccaagcttg
attaataggaataaaagaatgttgggtcaacttttagggactttggagagattcaggaaa
gaagataagcaactttcagggacagaggcatatatgagacggtcaaattccttgcaaaga
gctgagcaaagagctcgcgaagaaagtgagaagctgaggcaacaagagcgtgaacaaata
gcagaaaagaggaggagagatctgactctcagggctcgtgtagctgccaaggctgaagaa
aagaagctggagttgttgtttcttcagtggagtgagcaccacaaaaagcttagcaatttt
ataaggacgaaaactgagcctccaatatattatttaccaactaaaccattgcatgaagat
gcagccatatatgagcagcagaaagaacaagagtatttggaatggaagacagcaaggagg
gaggaactgtctgaatatcagaaacagataggagaagaatatgtagggaacgtggaaaag
gagttggagaggtggcaaaatgctcggaaagctaggaaagtaaacaatgacatgaaccta
caagaaacaatggacaaagaattggatagccatagactggagcatggtccaaagaagaga
aagataccaggtggaaacaacaatgaagatgaggaagatgtggaagatatcaatgttggg
gaagatgatatgatggatgatgtgttggatgttgatgataataatggtaggaggggagat
gaaacagcgaaagcagagcccgatgttgatcagctttga

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