Gossypium hirsutum (upland cotton): 107939403
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Entry
107939403 CDS
T04793
Name
(RefSeq) ubiquitin domain-containing protein DSK2b
KO
K04523
ubiquilin
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
107939403
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ghi04131
]
107939403
03051 Proteasome [BR:
ghi03051
]
107939403
Membrane trafficking [BR:
ghi04131
]
Autophagy
Chaperone mediated autophagy (CMA)
Selective cargos
107939403
Proteasome [BR:
ghi03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
107939403
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UBQLN1
ubiquitin
UBA
Rad60-SLD
STI1-HOP_DP
Ubiquitin_2
UBA_7
XPC-binding
Dsc3_N
UBA_NBR1_C
Rad60-SLD_2
TBK1_ULD
RPW8
Motif
Other DBs
NCBI-GeneID:
107939403
NCBI-ProteinID:
XP_016728223
UniProt:
A0A1U8MRQ0
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All DBs
Position
A03:113037769..113042988
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AA seq
548 aa
AA seq
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MGAEGDSSESRPVGNVGEKEEGVTVNIRCSNGTKFTVRTNLESTVGSFKALLAQNCDIPA
DQQRLIYKGRILKDDQTLQSYGLQADHTVHMVRGSAPSSSTPPSAATTNVATPNTTPGVT
LGVGSNDSAGLGASLFTGLNPLGSNGGFGLFESGLPEFEQVQQQLTQNPQVMREIMNTPA
IQSLMNNPELMRTLIMSNPQMREIIDRNPELGHILNDPSTLRQTLETARNPELMREMMRN
TDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGSNVDSPGSNPFAALLGNQGNSQA
RDSPNNTSTTGSETTPNTNPLPNPWSNNAGGGAAQTNTAARSNPATDARTPGVGGLGGLG
LPDMPPMLNGMPDASQLTQLLQNPAISQMMRSVASNPQYMNQIMNLNPQLRGMFDSNPQL
REMMQNPEVLRQMFSPETMQQMLTLQQSLLSQLNRQQSTQDSTQSSTTTGAPGTPSLDLL
MNMFGGLSAGSLSVPNQPNVPPEELYATQLSQLREMGFYDTEENIRALRATSGNVHAAVE
RLLGNPGQ
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atgggtgcggaaggggattcgagtgagtcacgacccgttggcaatgtaggagaaaaagaa
gagggagtgacggttaatatccgctgctcgaacggtacaaaatttacggtgaggaccaat
cttgaatcaaccgttggatctttcaaagctcttttggctcagaattgtgatatcccagct
gatcagcaacgattgatttataaagggcgaatattgaaagatgaccaaacccttcaaagt
tatggtttgcaagctgatcatacggtccacatggtccgtggttccgccccgtcttcgtct
acacctccttctgcagctaccacaaatgttgcaactcctaatacaacacctggggtcacg
cttggtgttggttctaacgacagtgctggcctaggagcttcgttattcactggactcaat
ccactcggtagcaatggaggtttcggtttgtttgaatccggacttcctgaatttgaacaa
gtacagcaacagctaactcaaaatcctcaagtgatgagggaaataatgaatacacctgct
attcaaagtttgatgaataacccggagttaatgcgcactttgattatgagcaatccccaa
atgcgtgaaataattgatcggaaccctgaacttgggcatatacttaacgatcctagcact
cttcggcaaaccttggaaactgcaaggaaccctgaactcatgcgtgaaatgatgcgaaat
actgatagggccatgagtaatattgaatcctctcctgagggatttaacatgcttaggcgt
atgtatgaaaacgttcaggagccatttttgaatgctacgactatggctggaagtaatgta
gatagtccaggttcgaaccctttcgcagccctattgggcaatcaaggtaattctcaagct
agagattcaccaaacaacacttctactactggttccgaaactaccccaaatacaaatcct
cttcctaacccttggagcaacaatgctggtggtggggcagcccagaccaatactgctgca
aggtcaaatcctgctacggatgctaggacacccggtgttggtggtctaggagggcttggg
ctaccagacatgccgcccatgctgaatggaatgccagatgcttctcagttgacacaattg
ttgcaaaacccagctatatcacaaatgatgcgtagtgtagcatctaatccccagtatatg
aatcagattatgaatctcaacccccaactgcgtggaatgtttgactcgaaccctcaattg
agagaaatgatgcaaaaccctgaagtacttcgtcagatgttttcccctgagacaatgcag
caaatgctaactttacaacagtcacttctgtctcagctcaatcggcagcaatctacacag
gattcaacgcagagcagtactactacaggagcacctggtactcctagtctggacttgttg
atgaatatgttcggtggtctcagtgccggtagccttagtgttcccaaccaacccaatgtt
cccccagaagaactgtatgctacacaattatcacaactccgagaaatgggtttctacgac
accgaagagaacattagagcacttcgtgctacttctggaaacgtccacgccgcagttgag
agacttcttggaaatcccgggcagtaa
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