Gossypium hirsutum (upland cotton): 107939532
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Entry
107939532 CDS
T04793
Name
(RefSeq) probable pectate lyase 13
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi00040
Pentose and glucuronate interconversions
ghi01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
107939532
Enzymes [BR:
ghi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
107939532
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
107939532
NCBI-ProteinID:
XP_016728361
UniProt:
A0A1U8MNE8
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Position
D06:complement(61356283..61361087)
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AA seq
497 aa
AA seq
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MLPFTCILFMCILASVSRATFNLSLPHQHPHPESVVLDVQWSLNASLSRRQTLSENTKDQ
CRTGNPIDDCWRCDPNWFNNRQRLADCSIGFARGTLGGKGGRIYTVTDSSDHDTVNPKPG
TLRHAVIQDEPLWIVFSTNMVIELKHELIFNSFKTIDGRGVNVHITGNGCLTLQYVSHII
IHNIHVHHCKPSGNTDIASSPTHVGRRGRSDGDGISIFGSQKIWVDHCSLSYCTDGLVDA
VMGSTGITISNSYFAHHDEVMLLGHDDRYLPDSGMQVTIAFNVFGVGLVQRMPRCRRGYI
HVVNNDFTSWQMYAIGGSGNPTINSQGNRYSAPGDPSAKEVTKRVDTDEKDWTGWNWRTD
GDIMVNGAYFVPSGAGVMTQYVKASSVEPKSATLVEQLTSNAGVFGETREETGSYSYPGY
TGTTNAGSGGRGGSSGNDGDFFGMIFGSGAPPLPPSRLIASIFLSFLIILFLHSTTKVFY
HYYCCSIHYKRKGINDN
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgcttcctttcacctgcattctcttcatgtgcatcttggcttcagtttcaagagctacc
ttcaatcttagtctccctcatcaacaccctcaccctgaatccgttgttcttgatgttcaa
tggagcttaaatgcatctttatctagaagacaaacattgtctgaaaacaccaaagatcaa
tgtcgaactggaaaccccattgatgattgctggagatgtgaccccaactggttcaataac
cgtcaacgcttagccgactgctccatcggcttcgcacgaggcaccctcggcggaaaaggc
ggtcggatctacaccgtcaccgattcctccgaccacgacaccgttaaccccaaaccaggc
acccttcggcacgccgtcatccaagacgaacccctttggatcgtcttttcaaccaacatg
gtcatcgaactcaaacacgaactcattttcaactctttcaaaaccattgacggtagaggg
gttaacgtccatataaccggaaatgggtgtttaacgttacagtacgtgtcgcatattatc
atccataatatccatgttcaccattgtaaaccttcggggaacactgacattgcttcatct
ccaacgcatgtggggaggagagggagatcggacggtgatgggatctccatttttgggtct
cagaaaatctgggttgatcattgttctttaagttactgcaccgatgggttggttgatgct
gttatggggtccactgggattaccattagtaatagctattttgctcaccatgatgaagtt
atgctcctgggacatgatgacaggtatttgcctgattcagggatgcaggtgacgatagca
ttcaatgtatttggggtgggattggtgcaaaggatgccaaggtgtaggagagggtatatt
cacgtggtcaacaatgatttcacttcatggcaaatgtatgccatcggcggcagcggtaac
cctaccatcaacagtcaaggcaatcgctactctgcccctggggatcccagtgctaaagag
gtgacaaagcgcgtggatactgacgagaaggattggacaggttggaactggagaacagat
ggggacataatggtcaatggagcgtattttgtaccctcaggagctggcgtaatgactcaa
tatgttaaagcttccagcgtggagcctaaatcagctaccctcgttgaacaactcacttca
aacgctggcgtttttggtgagaccagggaagagacagggagctattcttatcctgggtac
accggcacaaccaacgccggcagtggtggccgtggtggttccagtggcaatgatggtgac
ttcttcggaatgatatttgggagcggcgcgccaccactcccaccatctagattaatagcc
tcaatcttcttgtcctttttaattattttgtttttgcattcaaccaccaaggtgttctac
cattattattgttgtagtatacattataaaagaaagggaatcaatgataattaa
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