Gossypium hirsutum (upland cotton): 107939738
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Entry
107939738 CDS
T04793
Name
(RefSeq) polygalacturonase-like
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi00040
Pentose and glucuronate interconversions
ghi01100
Metabolic pathways
Module
ghi_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
107939738
Enzymes [BR:
ghi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
107939738
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
107939738
NCBI-ProteinID:
XP_040966661
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Position
A04:complement(2230873..2232339)
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AA seq
365 aa
AA seq
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MLTYYLIISEFGAKADGKTDLSKPFLDAWKEACASVTPSTVVIPKGTYLLSKVNLEGPCK
APIEINVQGTIQAPADPSAFKDPNWVRFYSVENFKMFGGGIFDGQGSIAYEKNTCENCEF
RSKLPVNIRFDFVTNALIQDITSKDSKLFHINVFACKNITLERLKIEAPDESPNTDGIHM
GKSEGVNIIASDIKTGDDCISIGDGTKNMVIKEITCGPGHGISIGSLGKFQNEEPVEGIK
ISNCTITNTSNGAQIKTWPGEHGGAVSEIHFEDITMNNVSSPILIDQQYCPWNKCKKNEE
SKVKLSNISFKNIRGTSALPEAIKFICSGSSPCQNVELADIDIKHNGAEPTTSQCLNVKP
ITSGK
NT seq
1098 nt
NT seq
+upstream
nt +downstream
nt
atgcttacttattacttgataattagtgagtttggcgcaaaagctgacgggaaaacggat
ttgagcaagccatttttggatgcttggaaagaagcatgtgcctctgtaactccatcaaca
gttgtgattcctaaagggacatatttattatcaaaagtaaacttagaaggtccatgcaag
gctcctattgagattaatgttcagggcactatacaggctccagctgatcctagtgctttc
aaagaccctaattgggttagattctatagtgttgaaaatttcaaaatgtttggcggagga
attttcgatggtcaaggaagcattgcttatgagaagaatacttgcgagaattgtgaattt
cgttccaaacttcccgttaatataaggtttgactttgtgaccaatgcattgatacaagac
ataactagcaaagacagtaaactattccacattaatgtttttgcttgcaaaaacattacc
ctcgaacgtttgaagatagaggcaccggacgagagcccaaacacagatgggattcacatg
ggcaagtcagagggggtcaatattattgcctctgacattaaaactggtgatgattgtatt
tctatcggagatggcactaaaaatatggtcataaaagaaataacttgtggaccaggacat
ggtataagtatcggtagtcttggaaagttccaaaatgaagagccagttgagggaatcaaa
atctcaaactgcaccatcactaatacttcgaatggagctcaaatcaaaacttggccaggc
gaacatggtggggcagtatcagaaatacattttgaggatattaccatgaataatgtctct
tcccctatcctaattgatcaacaatattgcccatggaataaatgcaagaaaaatgaagaa
tccaaagttaaactaagcaacattagcttcaagaacatccgtggcacatctgcgcttcca
gaagctatcaagtttatttgcagcggttcttcgccatgtcaaaatgtggaacttgcggac
attgatattaagcacaacggagctgaacccacaacatcccaatgtttgaatgtcaagcct
ataactagtggcaaatga
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