Gossypium hirsutum (upland cotton): 107939739
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Entry
107939739 CDS
T04793
Name
(RefSeq) polygalacturonase-like
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi00040
Pentose and glucuronate interconversions
ghi01100
Metabolic pathways
Module
ghi_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
107939739
Enzymes [BR:
ghi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
107939739
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Motif
Other DBs
NCBI-GeneID:
107939739
NCBI-ProteinID:
XP_016728599
UniProt:
A0A1U8MSS2
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Position
A04:complement(2289214..2290837)
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AA seq
407 aa
AA seq
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MAPHLNIVPSMFVLLLLFISASKVQSDAFDVVAKFGAKANGKTDLSKPFLDAWKEACASV
TPSTVVIPKGTYLLSKVNLEGPCKAPIEINVQGTIQAPADPSAFKDPNWVRFYSVENFKM
FGGGIFDGQGSIAYEKNTCENREFRSKLPVNIRFDFVTNALIQDITSKDSKLFHINVFAC
KNITLERLKIEAPDESPNTDGIHMGKSEGVNIIASDIKTGDDCISIGDGTKNMVIKEITC
GPGHGISIGSLGKFQNEEPVEGIKISNCTITNTSNGARIKTWPGEHGGAVSEIHFEDITM
NNVSSPILIDQQYCPWNKCKKNEESKVKLSNISFKNIRGTSALPEAIKFICSGSSPCQNV
ELADIDIKHNGAEPATSQCLNVKPITSGKLNPIPCSGPVPKTPSATA
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atggcaccacaccttaatattgttccttccatgtttgtacttttattattattcatttca
gcctctaaagttcaatcagatgcttttgatgttgttgccaagtttggcgcaaaagctaac
gggaaaacggatttgagtaagccatttttggatgcttggaaagaagcatgtgcctctgta
actccatcaacagttgtgattcctaaagggacatatttattatcaaaagtaaacttagaa
ggtccatgcaaggctcctattgagattaatgttcagggcactatacaggctccggctgat
cctagtgctttcaaagaccctaattgggttagattctatagtgttgaaaatttcaaaatg
tttggcggaggaattttcgatggtcaaggaagcattgcttatgagaagaatacttgcgag
aatcgtgaatttcgttccaaacttcccgttaatataaggtttgactttgtgaccaatgca
ttgatacaagacataactagcaaagacagtaaactattccacattaatgtttttgcttgc
aaaaacattaccctcgaacgtttgaagatagaggcaccggacgagagcccaaacacagat
gggattcacatgggcaaatcagagggggtcaatattattgcctctgacattaaaactggt
gatgattgtatttctatcggagatggcactaaaaatatggtcataaaagaaataacttgt
ggaccaggacatggtataagtatcggtagtcttggaaagttccaaaatgaagagccagtt
gagggaatcaaaatctcaaactgcaccattactaatacttcgaatggagctcgaatcaaa
acttggccaggcgaacatggtggggcagtatcagaaatacattttgaggatattaccatg
aataatgtctcttcccctatcctaattgatcaacaatattgcccatggaataaatgcaag
aaaaatgaagaatcgaaagttaaactaagcaacattagcttcaagaacatccgtggcaca
tctgcgcttccagaagcgatcaagtttatttgcagcggttcttcgccatgtcaaaatgtg
gaacttgcggacattgacattaagcacaacggagctgaacccgcaacatcccaatgtttg
aatgtcaagcctataactagtggcaaattaaacccgattccatgttccggccctgtccca
aaaacccctagcgccaccgcttaa
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