Gossypium hirsutum (upland cotton): 107939970
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Entry
107939970 CDS
T04793
Name
(RefSeq) pectate lyase-like
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi00040
Pentose and glucuronate interconversions
ghi01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
107939970
Enzymes [BR:
ghi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
107939970
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GFIT
Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
Motif
Other DBs
NCBI-GeneID:
107939970
NCBI-ProteinID:
XP_040950728
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Position
D05:38963998..38965587
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AA seq
434 aa
AA seq
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MGISSYSFFLFLFVVIIPTLEAHIAEYDEYWTARELEAIENLDKAYHSNPEEVVRHYNDH
FSRTMLEFYITKRVLAESKKGPCEVTNHVDSCWRCDPDWEKNRKKLANCAPGFARGTTGG
KDGEFYVVTDPIDNAADPKPGTLRHAVTQTGPLWITFKGSMTIKLQQELIVTSDKTIDAR
GANVEICNGAGITIQFVKNIIIHGLQIHHIIPAKGGKIKDGENHHGLRGDSDGDGVSIFG
STNVWLDHLALHHCADGLIDVVQGSTAVTVSNCHFSDHNDVMLFGASDSYSADKKMQVTV
ALNHFGKGLVERMPRCRFGFIHVVNNDYNHWFLYAIGGTSNPTIISQGNRYSAPGFGAKE
VTCRGLLKPGQWKNWNWVSQGDHFENGAFFTPSGNPSASKQFGADKMMPFKPGQMVPELT
KYAGPLSCTIGRPC
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgggtatttctagttatagtttctttctgtttttatttgttgtcataatcccaacccta
gaagctcatatagctgagtatgacgagtactggacggcacgagaattggaagccattgag
aacctggacaaggcctatcactccaacccggaggaggtggtccgccattacaatgaccac
ttctctaggaccatgctcgagttttatatcaccaaaagggtgttggcagaatcaaaaaag
ggtccctgtgaggttaccaaccacgttgacagttgctggcgatgtgatcctgactgggaa
aagaataggaagaagttggccaactgtgcccctggatttgctcgaggtactaccggtgga
aaggatggtgagttttacgtggtcactgaccctattgataatgctgctgaccccaagcct
ggaactctgcgtcatgctgtcacccaaactggaccactttggatcactttcaaagggtcc
atgaccatcaagctgcaacaggagctcattgttacaagtgataagaccattgatgcgagg
ggagccaatgtggaaatttgtaatggtgctggtatcactatccaatttgtaaagaatatc
attatccatggccttcaaatccatcacattattcccgccaagggtggcaagatcaaggat
ggtgaaaaccaccatgggttacggggtgacagcgacggagatggggtgtctattttcgga
tcaaccaatgtttggcttgaccatcttgcccttcaccattgcgccgatggccttatcgat
gtcgttcaaggatcaactgccgttaccgtttctaactgccacttcagtgaccataacgat
gtgatgttgtttggagcaagcgactcttacagtgccgacaagaagatgcaggtcactgtt
gctttgaaccacttcggtaaaggattggtagagaggatgcctaggtgccgatttggtttt
attcatgtcgtcaacaatgactacaatcactggttcctgtatgccattggcggcaccagc
aaccctacaattatcagccagggaaataggtattcagcgccaggctttggggctaaagag
gtgacctgtaggggcctcttaaagccgggacagtggaagaattggaattgggtatcacaa
ggtgaccacttcgagaacggtgccttttttacaccatcaggtaatccaagtgccagcaag
caatttggcgccgacaaaatgatgcctttcaaacctggtcaaatggtccccgagctcaca
aagtatgccggaccactaagctgcacaatcggccgtccttgctaa
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