Gossypium hirsutum (upland cotton): 107940052
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Entry
107940052 CDS
T04793
Name
(RefSeq) LOW QUALITY PROTEIN: DDB1- and CUL4-associated factor homolog 1
KO
K11789
DDB1- and CUL4-associated factor 1 [EC:
2.7.11.1
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
ghi01001
]
107940052
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ghi04121
]
107940052
Enzymes [BR:
ghi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
107940052
Protein kinases [BR:
ghi01001
]
Serine/threonine kinases: Other
Other
107940052
Ubiquitin system [BR:
ghi04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
107940052
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_WDHD1_1st
WDR55
WD40_Prp19
Beta-prop_EML_2
LisH
WD40_CDC20-Fz
ANAPC4_WD40
Motif
Other DBs
NCBI-GeneID:
107940052
NCBI-ProteinID:
XP_016728948
UniProt:
A0A1U8MTS9
LinkDB
All DBs
Position
D08:complement(69353588..69363349)
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AA seq
1988 aa
AA seq
DB search
MDDMSNQGQPPNRNPNSHPNPNQNEDQNQTEEQQPAEIEQQHHDEEEAEEEEDDEEEEEE
EEEEGRKEDEELMAKAQALMEKITSSPDNPNPTVLHALASLLETQESLFRCLEENGPSSS
NGRASHNVGQLGNLVRENDEFFDLISSKFLSESRYSTSVQAAAARLLLSCSVTWIYPHVF
EEPVLENIKAWVMNETPRFSIEDHNCKHDLPRNEASDAEILKTYSTGLLAVCLAGGGQVV
EDVLTSGLSAKLMRYLRVRVLGESTACQNDAFHLSESKSLSGAASFRSRDEGRGRVRQVL
ETTHIGDPRLIDEKPLDDHCPERDQERSTSRQSCGEECWVGDRQLSDGVGGGYMHDVDAD
SEERWHIRDIRDGKLRYGEVDENGRDESSRRRINRGSARSKGKGRTSEGVMENEQSLTSP
GSGSRSGLQHSMRDRNLSKHLDARKVLEAKKFVGKTNADNLVVEREDNDECFQGCKVGSK
DFSDLVKKAVRAAEAEAMAASAPVEAIKAAGEAAAEVVKCAALEEFKTTNNEEAALLAAS
KAAATVVDAANAIEVSRDSTSTGSDPINKSAAETEGNEDVEEYFIPNVEVLSQLKERYCI
QCLETLGEYVEVLGPVLHEKGVDVCLALLQRSSKIEEASKATSLLPDVMKLICALAAHRK
FAALFVDRGGMQKLLAVPRVAQNCFGLSSCLFTIGSLQGIMERVCALPSDVVHQVVELAI
QLLECPQDQVRKNAALFFAAAFVFRAVLDAFDAQDGLQKLLGLLNDAASVRSGANSGSLG
LSGTTSFRNERSPSEVLTSSEKQIAYHACVALRQYFRAHLLLLVDSIRPNKSNRSGVRSI
PSTRAAYKPLDISNEAMDAVFLQLQKDRKLGPAFVRTRWPAVEKFLGCNGHITMLELCQA
PPVERYLHDLLQYALGVLHIVTLVPISRKMIVNATLSNNRAGIAVILDAANSASSLVDPE
IIQPALNVLINLVCPPPSISNKPSLLAQGQQFASGQTTNAPAVETRNAERNILDRAVFLP
NQSEMRERSGELNLVDRGTAAGTQSTSSIAQTSVSAAASGLVGDRRISLGAGAGCAGLAA
QLEQGYRQAREVVRANNGIKVLLHLLQPRIYSPPAALDCLRALACRVLLGLARDETIAHI
LTKLQVGKKLSELIRDSGGLTPGTDQGRWQSELAQVAIELIAIVTNSGRASTLAATDAAT
PTLRRIERAAIAAATPITYHSRELLLLIHEHLQASGLAETAASLLKEAQLTPLPSLAAPA
SLAHQASVQDAPSTQLQWPSGRTSGGFLSSRSKIAIRDEDINMKCDSTSSLKKKSLVFSP
TFGLQPKNHFYSQDSQPPSVRKTLASSKSSVSDTQTESMMKSNLDSELHCKTPLVLPMKR
KLSELKDTGSTLSGKRFNTGDHGPRSPVCLTPNSTRRNCLLADAAVLTPTSIXRDQHVRA
TPSSLIDLSEDNLCGSSNVGQMTPSQVGLLNDPQPSNSERLSLDTIVVQYLKHQHRQCPA
PITTLPPLSLLHPHVCPMPKRSLDAPSNITSRLGTREFRSVYGGVHGNRRDRQFVYSRFR
PWRTCRDDAGSLLTCVCFLGDSSHIAVGSHAGELKIFYSNSNNVMDSCTGHQLPVTLVQS
YFSGETQMVLSSSSQDVRLWDASSFSGGAMHSFEGCKAARFSNSGSSFAALSADSTQREI
LLYDIQTYQLELKLSDASANSTGRGHVYSLIHFSPSDTMLLWNGVLWDRRVPDPVHRFDQ
FTDYGGGGFHPAENEVIINSEVWDLRKFRLLRSVPSLDQTAITFNARGDVIYAILRRNLE
DVMSAVNTRRVKHPLFAAFRTLDAINYSDIATIPVDRCVLDFATEPTDSFVGLITMDDQE
EMFSSARVYEIGRRRPTDDDSDPDDAESDEDEDDDDDDDADVDPILGPDLNGDGESDADE
MSSDDDSVSGLDDDDDDGDFITDDADFDGGGGILEIVTEGEDDDDDSQLVESFSSGEEED
FVGNGFGF
NT seq
5967 nt
NT seq
+upstream
nt +downstream
nt
atggatgatatgtcgaaccaagggcaaccgcccaatcgcaatcctaattctcatcccaat
cccaatcaaaatgaggaccagaatcaaacggaagagcagcaacctgcagaaatagagcag
caacatcacgacgaagaagaagcagaagaagaggaggacgacgaagaggaggaggaggaa
gaagaagaagaaggtaggaaggaagacgaggaattgatggcaaaagcgcaggctctcatg
gaaaagatcacttcttctcctgataaccctaatcctaccgtgctccatgctctcgcctcc
cttctcgaaactcaggagtctctttttagatgccttgaagagaatggtccttcttccagc
aatggtcgtgcctctcataatgttggacaactggggaacttagtcagggaaaatgatgaa
ttttttgatttgatatcatcgaagtttctttctgagagtagatattcaacctctgtccag
gcagcggctgctagacttcttctaagttgttctgtcacttggatttatcctcatgttttt
gaagaaccagttttggagaacatcaaagcttgggtaatgaatgagactcctagattttct
attgaagatcacaactgcaagcatgacttgccaagaaatgaagcctcggatgctgaaatt
ttgaaaacctattccactggacttcttgctgtgtgtttggcaggtggtggtcaagtggtg
gaagatgtcttgacttctggattgtctgctaagcttatgcgctatcttcgtgtacgagtc
cttggggagagtactgcttgtcaaaatgatgccttccatttatctgaaagcaagagtcta
tctggtgctgcttctttcagaagtagagatgaaggtcgaggcagggtgcggcaggttcta
gagacaactcatataggtgatcccagactaatagatgagaaaccattagatgaccattgt
cctgaacgggatcaagaacgaagcactagtcggcaatcatgtggagaggagtgttgggtt
ggtgacagacaactatctgatggggtgggaggggggtacatgcatgatgtggatgctgat
agtgaggaaagatggcatattcgagatattcgtgatggaaaattgagatatggtgaagtt
gatgaaaatgggagagatgaatcctccaggcgcaggataaaccgtggttctgcaaggtca
aagggtaagggaaggacttctgaaggggtcatggagaatgaacaatcactaacctcacca
ggctctggaagtcgttctggactgcaacatagcatgagagacagaaatttgtctaagcat
ttagatgcaagaaaggtgctggaggcaaagaagtttgtgggaaagactaatgctgataat
ctggtagtggaaagagaggacaatgatgaatgctttcaaggatgcaaagttggaagtaaa
gatttctctgatctggttaaaaaagcggttagagctgctgaagctgaagctatggcagca
agtgcacctgttgaagccatcaaagcagctggtgaagctgcagctgaagttgtcaagtgt
gctgctttagaggagttcaaaactactaacaatgaagaagctgcattattggctgcatcc
aaagcagcagctacagttgttgatgctgctaatgccattgaagtctcaagggactccact
agcacaggttctgatccaataaataaaagtgctgcagaaacagaaggaaacgaggatgtt
gaggagtattttattcccaatgttgaggtactttcacagttgaaagaaagatactgtatt
cagtgccttgagactttaggtgaatatgttgaagtcctcgggcctgtattgcatgaaaag
ggcgtagatgtctgtctagccctgttgcaacgaagttccaagattgaagaagcatcaaag
gctacttctctcttacctgatgtgatgaagctaatttgcgctttagcagcccatcggaag
tttgctgcattgtttgttgatcggggtggcatgcaaaaactgctcgctgttccaagagtg
gctcaaaattgttttggtctttcttcttgcttatttaccataggttccctacagggaata
atggaacgtgtctgtgcacttccttctgatgttgttcaccaagtggttgagctagctatc
caacttcttgaatgtccgcaggatcaagttaggaaaaatgcagcactattttttgctgct
gcatttgtcttcagagcggtgcttgatgcttttgatgctcaagatggcttgcagaaatta
ttgggccttttaaatgatgctgcctcggtaagatctggggcaaattctggctcattaggc
ttgtctggaacaacatcatttcgaaatgagagatcaccgtcagaggtactgacttcctca
gaaaagcagatagcttatcatgcatgtgttgctttgcggcaatacttcagagctcatctt
cttctgcttgtggattccatacgcccaaataaaagtaaccggagtggggtgcggagtatt
ccaagcaccagagcagcatacaagccacttgatattagtaatgaggctatggatgctgtg
tttctgcagttgcagaaggaccggaagctgggtcctgcttttgtgaggactcggtggcct
gctgtcgagaagttcttaggatgtaatggacatattaccatgttggaattgtgtcaggct
ccacctgttgagcgttacctacatgacttgttacagtatgcattaggtgttctgcacatt
gttactttggtgcctataagccgcaagatgattgtaaatgccactttgagcaataatcgt
gctggtatagcagttattttggatgcagcaaatagtgctagtagtctcgtggaccctgag
attatacagccagctcttaatgtgttaattaacctagtttgtcctccaccttcaatcagc
aataaaccatcattactagctcaaggtcagcagtttgcttctggtcaaaccacaaatgct
cctgctgtggaaactagaaatgcagaacgtaatattttggatcgagctgttttcctgcct
aatcagagtgagatgagggaacgaagtggagagttgaatttggtagatagaggcactgca
gcaggcactcaatccaccagcagtattgctcaaacatctgtttctgctgctgcatctggt
ttggttggagatcgtagaatatctttaggtgccggagcaggttgtgctggccttgctgca
caattagaacaaggatatcgtcaagcaagagaggttgtccgtgccaataatggcataaag
gttctactgcatctcctccaaccccgtatatattcacctcctgctgctttggattgcctt
cgggcccttgcatgccgagtcttgcttggtttagctagagatgagacaattgcacatata
ttgaccaagcttcaggttggcaagaagctatcagaactgattcgagattcaggtggcctg
acacctggaactgaccaaggcaggtggcaatctgaacttgctcaggtggcaattgagcta
attgctattgttacaaattctgggcgtgctagtacgttggctgctacagatgctgctaca
cctacattgagacgcatagagagagctgctattgctgctgcgactcctattacttaccat
tccagggagcttttgcttctcatacatgaacatcttcaggcatctggtcttgctgaaact
gctgcttcacttctgaaagaagctcaattgacacctttgccatccttggctgcccctgca
tctcttgcccaccaagcctctgtgcaagatgctccttcaacacaactccagtggccctca
ggtcgtacctctggtggatttctctccagcagatccaagattgctatccgagatgaggat
attaatatgaagtgtgattcaacttcatctttaaagaagaaatcacttgttttctctccc
acttttggattacaaccaaaaaatcacttctattctcaagattcccaacctccatctgtc
agaaaaacactcgccagttcaaaatcaagtgtttctgatactcagactgaatctatgatg
aaaagtaaccttgattcagaattgcactgtaagactcctcttgtgttgcctatgaaaaga
aagttatctgagttaaaggatactggttcaacattatcagggaagcggttcaacactggt
gatcatggaccgaggtctccggtttgtctgacacccaattctactcgaagaaactgtctg
cttgctgatgctgctgtattgacgccaacttctattntaagggatcagcatgttcgagca
acaccaagcagcttaattgatttgtcagaggacaacctatgtggtagttctaatgtggga
cagatgacgccttcccaagttggacttctaaatgatccccaacccagcaactcagaacgt
ttaagtctagacactatagttgttcagtatctaaagcatcagcatcgtcagtgccctgct
cctataacaacccttcctccactttctcttttgcatccacatgtttgtcctatgccaaag
agaagccttgatgcgccatcaaacatcacttcccgacttggtactcgtgagttcaggagt
gtttatggtggagtccatggaaatcgtagagatcgtcagtttgtttacagtagattcagg
ccatggagaacttgcagggatgatgctggcagtttgttgacatgtgtctgttttctgggg
gactcctcccatattgcagttggcagccatgctggggagctaaaaattttttattctaac
agcaataatgtaatggacagctgcacaggccaccagcttcctgtgactcttgttcagtca
tatttttctggtgagacccaaatggttctatcatcaagctctcaggatgtgcggttgtgg
gatgcctcttctttctcaggtggggctatgcattcatttgaaggctgcaaggctgctagg
ttcagcaattctgggagcagttttgctgccctatctgctgattctacccagcgagagatt
ctcctttatgatatccagacctatcagttggaattgaagctttctgatgcatcagctaat
tctacgggtcgaggtcatgtatattctcttatacattttagcccatctgatactatgctg
ctttggaatggtgttttatgggaccggcgggttccagatccggttcatcgctttgatcag
tttacagattatggtggtggtggttttcatcctgctgagaatgaggttatcataaattct
gaggtttgggatttgcggaagttcagactacttcgaagtgtaccttctttagatcaaaca
gcaataaccttcaatgcacgtggggatgtaatttatgctatcctgaggagaaatcttgaa
gatgtgatgtcagcagttaatacccgtcgcgtgaaacatcctttatttgctgctttccgc
acattagatgccattaactactctgatattgcaactattccagtggatcgatgtgttctt
gactttgcaactgaaccaactgattcctttgttgggttgattacaatggatgaccaagaa
gagatgttttcatcagccagggtttatgaaattggtcgccgaaggccgactgatgatgat
tctgatcctgatgatgcagaaagtgatgaggacgaggatgacgacgacgacgacgatgct
gatgtagatccaatacttgggccagatctcaatggggatggtgagagtgacgcagatgaa
atgagcagtgacgatgatagtgtgagtgggcttgatgatgatgatgatgatggggatttt
atcacagatgatgcagactttgatggtggaggtgggatattggagattgtgactgagggt
gaggatgatgatgatgacagccagttggttgaatcttttagcagtggtgaagaagaggat
tttgtggggaatggttttggtttctaa
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integrated database retrieval system
