Gossypium hirsutum (upland cotton): 107940558
Help
Entry
107940558 CDS
T04793
Name
(RefSeq) replication factor C subunit 5
KO
K10756
replication factor C subunit 3/5
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03030
DNA replication
ghi03410
Base excision repair
ghi03420
Nucleotide excision repair
ghi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
107940558
03410 Base excision repair
107940558
03420 Nucleotide excision repair
107940558
03430 Mismatch repair
107940558
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ghi03032
]
107940558
03036 Chromosome and associated proteins [BR:
ghi03036
]
107940558
03400 DNA repair and recombination proteins [BR:
ghi03400
]
107940558
DNA replication proteins [BR:
ghi03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
107940558
DNA Replication Termination Factors
ELG1-RFC complex
107940558
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
107940558
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
107940558
Check point factors
HRAD17(Rad24)-RFC complex
107940558
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
RCF1-5-like_lid
AAA_22
AAA_16
AAA_11
AAA_assoc_2
ATPase_2
AAA_14
AAA_24
AAA_5
DUF815
ResIII
AAA_30
RuvB_N
AAA_7
AAA_19
DNAX_ATPase_lid
AAA_3
bpMoxR
nSTAND3
TniB
SLFN-g3_helicase
AAA_2
TIP49
AAA_25
AAA_28
AAA_18
Mg_chelatase
DUF3086
Motif
Other DBs
NCBI-GeneID:
107940558
NCBI-ProteinID:
XP_016729494
UniProt:
A0A1U8MV99
LinkDB
All DBs
Position
D05:22200902..22205155
Genome browser
AA seq
363 aa
AA seq
DB search
MAEVVSLMDIDEDDNHQKQNNSQKLNKGKGVVTAADTKPTPWVEKYRPQSLADVAAHRDI
VDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGSQYRNMILELNASDDRGIDVV
RQQIQDFASTQSFSFGAKSSVKLILLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHV
NKIIPALQSRCTRFRFAPLDPIHVTERLKHVIQAERLDVPDCGLAALVRLSNGDMRKALN
ILQSTHMASQKITEEAVYLCTGNPLPKDIEQISYWLLNESFAESFKRVSETKTRKGLALI
DIVREVTMFVFKIKMPSDVRVQLINDLADIEYRLSFGCNDKLQLGSLIAIFTKARSSLVA
AVK
NT seq
1092 nt
NT seq
+upstream
nt +downstream
nt
atggcggaagtagtttctctaatggacatcgacgaagacgacaaccaccagaaacaaaac
aactctcaaaagcttaacaagggcaaaggtgtcgtcacagccgccgataccaaacccact
ccctgggtcgagaagtaccgtcctcagtcactcgccgacgtagccgctcaccgcgacatc
gttgacaccattgataggcttacaagcgagaacagattgccgcatcttctattgtatggt
cctcccggaactggcaaaacatctaccattctggctgttgcacggaagctttatggatca
cagtatcgtaatatgattctcgagttgaatgcttcagatgatagaggaattgatgttgtt
aggcaacagattcaagattttgctagcacccaaagcttctcatttggggcgaagtcatca
gtgaagttgattttacttgatgaggctgatgctatgacaaaggatgcccaatttgctttg
cgtagagttatcgagaaatatacaaagaatacgagatttgcactgatctgtaatcacgtc
aacaagatcattccagcattacagtccagatgtactcggttccgatttgcacctcttgat
cctattcatgtcactgagcgacttaaacatgttatacaggctgaaaggcttgatgtacct
gattgtggcttggcagcactagtacggcttagcaatggtgacatgagaaaggctttgaac
attttgcagtcaacacacatggcttctcagaagattacagaagaagccgtgtatctctgt
actggaaatccgttgcctaaagacatcgagcaaatatcttactggcttctgaatgaatca
tttgcagagagtttcaaacgagtatctgaaacaaagaccaggaaaggattagccctgatc
gatattgtaagggaagtgacaatgtttgtttttaagattaaaatgccctcagatgttcga
gttcagttaattaatgacttggcagacatagagtatcgattgagttttgggtgcaatgat
aagttgcaactgggatctctcattgctattttcacaaaagctagatcttccctagttgcg
gcagtgaagtag
DBGET
integrated database retrieval system
