Gossypium hirsutum (upland cotton): 107940604
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Entry
107940604 CDS
T04793
Name
(RefSeq) probable rhamnogalacturonate lyase B
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
107940604
Enzymes [BR:
ghi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
107940604
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GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
CBM27
CarbopepD_reg_2
Motif
Other DBs
NCBI-GeneID:
107940604
NCBI-ProteinID:
XP_016729533
UniProt:
A0A1U8MVH4
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Position
A02:complement(103760867..103765786)
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AA seq
679 aa
AA seq
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MEKVVNMSHWRRKLVLWMVMVIQLSLFLSVFSTEIHARKFLKDNDINTNDVRLHISDRQV
IIDNGLVEVTIENPSGYLIGIKYKKMQNVLERRNHISNRGYWDIVWDGDSYDKLETKHVE
VITQTNDIVELSFTKTWNSKNHGKTIPLNIQKRYIVRRGISGVYMYGIFERQEDFPKAHM
YQIRIAFKLKEDKFRFMALSDTIQRVMPRSEDRVKGHSKPLDFKEAVLLTNPSNPKLKGE
VDDKYQYSIENKDNKLNGWISDHDSIGFWIMTPSNEFRTGGPHKQDLTSHVGPTALSMFV
STHYTGTEIDTFYKEGEAWKKVFGPVLIYLNSASLKDDDHRKILWNDAKRQLSEEIESWP
YNFTRSEDFPHSQQRGQVNGQLLVQDRYMDKQLMQAKSAFVGLAPPGEADSWQKEGKGYQ
FWTQTDKIGRFNIKNVRPGVYNLYAWVHGFIGSYKLDLNITIQPENKIELDTLIYDPPRN
GPTLWEIGIPDRTAAEFFIPEPYPQYVNSITNDGADKFRQYGLWDRYSDIYRDSDLVYTV
GTSNYSKDWFFAHVPRKIGDDWYRPTTWQIKYNLQDVNNRGTYTLQMAIAAASFAEVEVR
FNDPNSDRPHFTTRRIGYDNAVPRHGIHGLYRLYSIEVPGYRFLKGSNTIYLTQTRSDNS
FEAVMYDYIRLEGPNSLNN
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggagaaggtggtaaacatgagccattggagaagaaaacttgttttgtggatggtaatg
gtgattcaattatcactgtttctctctgttttctctactgaaatccatgccagaaaattc
ctaaaggacaacgacattaacactaatgatgtccggttacacataagtgatcgccaagtg
attattgataatggacttgttgaagtcactatcgagaatccatctggttacttgatagga
attaaatataaaaagatgcaaaatgtacttgaaaggagaaaccacatttctaatagaggg
tactgggacattgtgtgggatggtgattcctatgataaactagaaaccaaacacgtcgag
gtcataacacaaactaatgacattgtagagctttcctttaccaaaacatggaattccaaa
aaccatggcaagacaattcccttgaacatacaaaaaaggtacatagtccggcgcggcatc
tcaggggtctacatgtacggcattttcgagcgccaggaagattttcccaaagctcatatg
taccaaataaggattgctttcaagcttaaggaagacaagttccgattcatggcgttatcg
gacacgatacaacgagtcatgcctcgaagtgaagatcgggtcaaaggtcatagtaagcct
cttgacttcaaagaagctgttttactgacaaatccatcaaatccaaaacttaaaggagag
gttgacgataagtaccaatattctattgagaataaagataacaagcttaacggttggata
tcagaccacgattccattggtttttggataatgacccctagtaatgagtttcgaacaggc
ggtccgcataaacaggaccttacttctcatgttggtccgactgctctttcgatgtttgtt
agtacacattataccgggactgaaatcgacacattctataaggaaggagaggcttggaaa
aaagtttttggtccggttttgatctatcttaattctgcttctttaaaggacgatgatcac
cgaaagatcctgtggaatgatgctaaaagacagttgagtgaagaaattgaaagttggcct
tacaatttcactcgatcagaagattttcctcactctcaacaacgaggacaagttaatgga
caactgctagtgcaagaccggtacatggataagcaattaatgcaggcaaaatctgccttt
gtgggattggccccccctggagaagctgattcatggcaaaaagaaggaaagggctaccaa
ttttggacccaaaccgacaagattggtcgtttcaacataaaaaatgtgcgaccaggggtg
tataatttgtatgcttgggtccatggtttcattggaagctacaaattagatctcaatatc
actatccaaccagaaaataagatcgaattggatacacttatatatgatccaccaagaaat
ggaccaacattgtgggaaattgggattccagacaggacagcggccgagttcttcatacct
gaaccatacccacaatatgtcaattcaattaccaatgatggtgcagacaaattcaggcaa
tatggattgtgggatcgatactcggatatttatcgtgatagtgaccttgtctacactgtg
ggtacaagcaactattcaaaggattggttctttgctcatgttccaaggaaaatcggggac
gattggtaccgaccaacaacatggcaaatcaaatacaatctccaagatgtaaacaataga
ggaacctacactctccaaatggcaatagcagcagcttcttttgcagaagtagaggttcga
ttcaacgatccaaattccgatcgacctcattttacaaccagaagaatcggttacgacaac
gccgtaccaaggcacgggattcatggattgtacagattgtacagcattgaagtacctgga
tatagatttcttaaagggagcaacacaatatatcttactcagacaagaagtgacaactcc
tttgaagctgttatgtatgattacattcggttagaagggcctaatagtttaaacaattaa
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